Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   K5706_RS01835 Genome accession   NZ_AP019849
Coordinates   391384..392028 (-) Length   214 a.a.
NCBI ID   WP_128810046.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain 04Ya249     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 386384..397028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5706_RS01825 (VA249_03030) uvrA 387351..390173 (-) 2823 WP_221070820.1 excinuclease ABC subunit UvrA -
  K5706_RS01830 (VA249_03040) galU 390352..391224 (-) 873 WP_211915879.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  K5706_RS01835 (VA249_03050) qstR 391384..392028 (-) 645 WP_128810046.1 LuxR C-terminal-related transcriptional regulator Regulator
  K5706_RS01840 (VA249_03060) ssb 392306..392836 (+) 531 WP_221070821.1 single-stranded DNA-binding protein Machinery gene
  K5706_RS01845 (VA249_03070) csrD 393053..395062 (+) 2010 WP_221070823.1 RNase E specificity factor CsrD -
  K5706_RS01850 (VA249_03080) - 395074..396522 (+) 1449 WP_221070825.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24682.66 Da        Isoelectric Point: 9.4033

>NTDB_id=74382 K5706_RS01835 WP_128810046.1 391384..392028(-) (qstR) [Vibrio alfacsensis strain 04Ya249]
MKKSAYARKLFLVSVEKHAERKVEAIEKYMDIEIPVITTDALMEANPTHRNKILVIDYAEHKYLIQSIKNLPLIWKNFET
VVFNVPKRLTTDDLLTLGQLKGIFYQYQSTEQVGEGLMGIINGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGSSNIQMAEDLFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=74382 K5706_RS01835 WP_128810046.1 391384..392028(-) (qstR) [Vibrio alfacsensis strain 04Ya249]
GTGAAAAAATCAGCTTACGCGAGAAAACTGTTTCTTGTCAGCGTAGAAAAACATGCTGAAAGAAAAGTAGAAGCGATAGA
GAAATACATGGATATCGAGATCCCGGTCATTACTACGGATGCCTTGATGGAGGCGAATCCTACACACCGCAACAAGATAT
TAGTGATTGACTATGCTGAACACAAATACCTGATTCAATCTATAAAGAACCTACCGCTGATTTGGAAGAACTTTGAGACC
GTCGTGTTCAACGTCCCAAAACGTCTCACCACTGATGACTTGCTGACACTCGGACAGCTAAAAGGTATTTTCTACCAGTA
CCAATCCACAGAACAAGTTGGAGAGGGACTCATGGGTATTATCAATGGGCAAAACTGGTTACCAAGAAATGTCACAAGCC
AACTGCTCCATTACTATCGCAATGTGATCAATACACATACGGCGCCAGCAACCGTTGATTTAACTATCCGTGAACTCCAA
GTGCTTCGCTGTTTGCAAGCAGGCTCTTCAAACATTCAAATGGCGGAAGATCTTTTCGTCAGTGAATTCACCATCAAGTC
ACACTTGTATCAGATTTTTAAAAAGCTTTCGGTAAAAAATCGAGTTCAAGCAATAGCTTGGGCAGATCAAAACCTAATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

85.047

100

0.85
  qstR Vibrio parahaemolyticus RIMD 2210633

83.645

100

0.836
  qstR Vibrio cholerae strain A1552

52.336

100

0.523

Multiple sequence alignment