Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | K5706_RS01610 | Genome accession | NZ_AP019849 |
| Coordinates | 339207..339782 (+) | Length | 191 a.a. |
| NCBI ID | WP_221070793.1 | Uniprot ID | - |
| Organism | Vibrio alfacsensis strain 04Ya249 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 334207..344782
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5706_RS01595 (VA249_02650) | oxyR | 334514..335422 (+) | 909 | WP_221068222.1 | DNA-binding transcriptional regulator OxyR | - |
| K5706_RS01600 (VA249_02660) | - | 335504..338068 (-) | 2565 | WP_221070788.1 | penicillin-binding protein 1A | - |
| K5706_RS01605 (VA249_02670) | pilM | 338210..339223 (+) | 1014 | WP_221070791.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| K5706_RS01610 (VA249_02680) | pilN | 339207..339782 (+) | 576 | WP_221070793.1 | PilN domain-containing protein | Machinery gene |
| K5706_RS01615 (VA249_02690) | pilO | 339775..340368 (+) | 594 | WP_221070794.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| K5706_RS01620 (VA249_02700) | pilP | 340358..340867 (+) | 510 | WP_221070797.1 | pilus assembly protein PilP | Machinery gene |
| K5706_RS01625 (VA249_02710) | pilQ | 340927..342606 (+) | 1680 | WP_420883200.1 | type IV pilus secretin PilQ | Machinery gene |
| K5706_RS01630 (VA249_02720) | aroK | 342795..343313 (+) | 519 | WP_099080818.1 | shikimate kinase AroK | - |
| K5706_RS01635 (VA249_02730) | aroB | 343342..344442 (+) | 1101 | WP_221068216.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 22185.38 Da Isoelectric Point: 10.2578
>NTDB_id=74378 K5706_RS01610 WP_221070793.1 339207..339782(+) (pilN) [Vibrio alfacsensis strain 04Ya249]
MLYRINLLPWREHQRKAHRHRFVSLAVFGVMTAAIIQWGGNQYLQAQQAEQQKRLDYLSNHITLFDQRIEAMKIAEQEHR
QVLQRLNVVDQLQRGRSKTTAFMNLIPSVIPEGVYVDKIKINHYYVELSGIADSTSHLATMLDNMERSAKLYEVDMHSIV
HGKSRFGRSFQQFNVSFRLREAQGAGSLHHG
MLYRINLLPWREHQRKAHRHRFVSLAVFGVMTAAIIQWGGNQYLQAQQAEQQKRLDYLSNHITLFDQRIEAMKIAEQEHR
QVLQRLNVVDQLQRGRSKTTAFMNLIPSVIPEGVYVDKIKINHYYVELSGIADSTSHLATMLDNMERSAKLYEVDMHSIV
HGKSRFGRSFQQFNVSFRLREAQGAGSLHHG
Nucleotide
Download Length: 576 bp
>NTDB_id=74378 K5706_RS01610 WP_221070793.1 339207..339782(+) (pilN) [Vibrio alfacsensis strain 04Ya249]
ATGTTGTATCGCATTAATTTGTTGCCATGGCGCGAGCATCAACGTAAGGCGCATCGTCACCGTTTTGTTAGCCTCGCTGT
TTTTGGAGTAATGACTGCGGCGATCATTCAGTGGGGAGGAAATCAGTATTTACAGGCTCAACAAGCTGAGCAGCAAAAGC
GTCTAGATTATCTCTCAAATCACATTACGCTTTTTGATCAGCGGATTGAAGCGATGAAAATTGCGGAGCAAGAGCATCGC
CAAGTTCTGCAGCGATTAAATGTTGTTGACCAATTACAGCGAGGACGAAGCAAAACGACGGCGTTTATGAATCTTATCCC
CTCGGTGATCCCTGAGGGGGTTTATGTCGATAAGATTAAAATCAATCACTATTACGTTGAGCTTTCTGGGATTGCAGATA
GCACATCCCATCTGGCGACGATGCTCGATAATATGGAGCGATCAGCAAAGCTTTATGAAGTAGATATGCATTCTATTGTT
CATGGTAAATCACGCTTTGGGAGATCATTCCAACAATTTAATGTCTCTTTTCGATTACGGGAAGCGCAAGGGGCAGGAAG
TCTACATCATGGTTAA
ATGTTGTATCGCATTAATTTGTTGCCATGGCGCGAGCATCAACGTAAGGCGCATCGTCACCGTTTTGTTAGCCTCGCTGT
TTTTGGAGTAATGACTGCGGCGATCATTCAGTGGGGAGGAAATCAGTATTTACAGGCTCAACAAGCTGAGCAGCAAAAGC
GTCTAGATTATCTCTCAAATCACATTACGCTTTTTGATCAGCGGATTGAAGCGATGAAAATTGCGGAGCAAGAGCATCGC
CAAGTTCTGCAGCGATTAAATGTTGTTGACCAATTACAGCGAGGACGAAGCAAAACGACGGCGTTTATGAATCTTATCCC
CTCGGTGATCCCTGAGGGGGTTTATGTCGATAAGATTAAAATCAATCACTATTACGTTGAGCTTTCTGGGATTGCAGATA
GCACATCCCATCTGGCGACGATGCTCGATAATATGGAGCGATCAGCAAAGCTTTATGAAGTAGATATGCATTCTATTGTT
CATGGTAAATCACGCTTTGGGAGATCATTCCAACAATTTAATGTCTCTTTTCGATTACGGGAAGCGCAAGGGGCAGGAAG
TCTACATCATGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
64.398 |
100 |
0.644 |
| pilN | Vibrio cholerae strain A1552 |
52.577 |
100 |
0.534 |