Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GL2_RS05765 Genome accession   NZ_AP019807
Coordinates   1338800..1340296 (+) Length   498 a.a.
NCBI ID   WP_143729704.1    Uniprot ID   A0A510IQB7
Organism   Microbulbifer sp. GL-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1333800..1345296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GL2_RS05730 (GL2_11630) - 1333802..1334539 (+) 738 WP_143729698.1 DUF484 family protein -
  GL2_RS05735 (GL2_11640) - 1334640..1334864 (-) 225 WP_143729699.1 hypothetical protein -
  GL2_RS05740 (GL2_11650) glnK 1335247..1335585 (-) 339 WP_020413692.1 P-II family nitrogen regulator -
  GL2_RS05745 (GL2_11660) - 1335672..1336931 (-) 1260 WP_143729700.1 ammonium transporter -
  GL2_RS05750 (GL2_11670) - 1336990..1337328 (-) 339 WP_143729701.1 P-II family nitrogen regulator -
  GL2_RS05755 (GL2_11680) - 1337372..1338097 (-) 726 WP_143729702.1 TorF family putative porin -
  GL2_RS05760 (GL2_11690) - 1338526..1338768 (+) 243 WP_143729703.1 accessory factor UbiK family protein -
  GL2_RS05765 (GL2_11700) comM 1338800..1340296 (+) 1497 WP_143729704.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GL2_RS05770 (GL2_11710) - 1340426..1340713 (+) 288 WP_143729705.1 putative quinol monooxygenase -
  GL2_RS05775 (GL2_11720) - 1340721..1341161 (+) 441 WP_143729706.1 MarR family winged helix-turn-helix transcriptional regulator -
  GL2_RS05780 (GL2_11730) bla 1341391..1342263 (-) 873 WP_143729707.1 subclass B3 metallo-beta-lactamase -
  GL2_RS05785 (GL2_11740) - 1342273..1343232 (-) 960 WP_143729708.1 S9 family peptidase -
  GL2_RS05790 (GL2_11750) - 1343374..1343931 (-) 558 WP_143729709.1 GNAT family N-acetyltransferase -
  GL2_RS05795 (GL2_11760) - 1343939..1344445 (-) 507 WP_143729710.1 GNAT family N-acetyltransferase -
  GL2_RS05800 (GL2_11770) - 1344461..1344913 (-) 453 WP_143729711.1 YaiI/YqxD family protein -
  GL2_RS05805 (GL2_11780) - 1344910..1345134 (-) 225 WP_143729712.1 DUF3565 domain-containing protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53564.38 Da        Isoelectric Point: 8.3113

>NTDB_id=74216 GL2_RS05765 WP_143729704.1 1338800..1340296(+) (comM) [Microbulbifer sp. GL-2]
MSLSVIYTRAQLGVSAPLVIVETHLANGLPAFHIVGLPEAAVRESRDRVRSALINSHFEFPQRRITVNLAPADLPKEGGR
YDLAIAIGILAASGQVPGESLENYEFIGELALTGALREISGALPAAITSAAAKRKLVIPLENSAEAALAGAEVGAATSLL
QVCAELHGREKLPRAEQKVDQSVIDCPDLADVRGQLKARRALEVAAAGGHNLLFYGPPGTGKTMLASRLPGILPPLTTTE
SIEVAAVYSSAGLPHQSLRPFRAPHHSASPTALVGGGSTPRPGEISLAHRGVLFLDEMPEFPRHALEILREPLENGEVRI
SRARAQVTYPAHFQLVGAMNPCPCGYLGEPRCRCTPDQIDRYRNKLSGPLLDRIDMQVEVGAMNALQLQDAAAGEPSDSV
RERVCAARQLQTQRQGTTNNLLKGAELETHCVLGEKEKHLLRQSVEKLGLSARSYHRVLKVARTLADLASLQRISSAQIA
EALAYRNLDRRQTVISSR

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=74216 GL2_RS05765 WP_143729704.1 1338800..1340296(+) (comM) [Microbulbifer sp. GL-2]
GTGAGCCTCTCAGTAATCTATACCCGCGCTCAATTGGGCGTATCCGCCCCGCTGGTCATCGTTGAGACGCACCTGGCCAA
TGGGTTACCTGCCTTCCATATTGTCGGCCTGCCCGAAGCAGCGGTCAGAGAGAGCCGCGATCGGGTACGCAGCGCCCTGA
TCAACAGCCATTTTGAATTTCCCCAGCGCCGTATCACTGTCAACCTGGCTCCCGCAGACCTACCCAAGGAGGGCGGACGC
TACGACCTCGCCATTGCCATCGGCATACTCGCGGCCTCCGGGCAAGTTCCCGGTGAATCACTGGAAAACTATGAATTTAT
TGGCGAGCTGGCACTTACCGGTGCTCTGCGCGAAATTAGTGGTGCACTGCCCGCAGCCATCACAAGCGCCGCAGCCAAAC
GGAAACTGGTAATACCCCTGGAAAATAGTGCGGAGGCAGCCCTTGCGGGGGCAGAAGTTGGCGCTGCTACTTCATTATTA
CAAGTCTGCGCAGAGCTCCATGGGCGGGAAAAACTACCCCGAGCTGAACAAAAGGTCGATCAATCAGTTATTGACTGCCC
GGATCTTGCCGACGTTCGAGGTCAATTAAAGGCCCGGCGCGCCCTGGAGGTAGCAGCCGCCGGTGGGCACAACCTGCTTT
TCTATGGCCCACCAGGCACAGGTAAAACCATGCTGGCCAGCCGCCTGCCAGGAATATTGCCCCCTCTCACCACTACTGAA
TCAATCGAAGTGGCCGCCGTTTACTCCAGCGCAGGCTTGCCCCATCAGAGCCTGCGCCCTTTCAGGGCTCCGCATCACAG
TGCTTCACCAACCGCTTTGGTCGGTGGCGGCAGCACCCCAAGACCCGGTGAAATCTCCCTCGCCCACCGGGGCGTCTTGT
TTCTCGACGAAATGCCCGAGTTCCCCCGCCACGCTCTGGAGATACTGAGGGAACCTCTGGAGAACGGTGAAGTGCGTATC
TCCCGGGCACGGGCCCAAGTCACCTACCCCGCTCACTTTCAACTGGTTGGGGCTATGAATCCCTGCCCCTGTGGCTATTT
GGGTGAGCCCCGTTGCCGTTGTACGCCGGACCAGATAGACCGATATCGCAACAAACTCTCTGGCCCTCTGCTGGATCGTA
TCGATATGCAGGTAGAAGTGGGCGCCATGAATGCTCTGCAATTACAGGATGCAGCCGCCGGAGAACCATCGGACAGTGTC
AGGGAAAGGGTCTGTGCTGCGCGACAGCTGCAAACTCAGCGACAGGGCACCACCAACAACTTGTTAAAAGGGGCGGAGCT
GGAAACCCACTGCGTGCTGGGAGAAAAAGAGAAACACCTGTTACGCCAATCGGTAGAAAAGCTGGGACTCTCCGCGCGCA
GTTATCACCGGGTACTTAAAGTGGCCCGCACCCTGGCAGACCTCGCTAGTTTGCAGAGGATCAGCTCAGCACAAATTGCT
GAGGCCTTGGCCTACCGCAATTTGGATAGGCGCCAAACAGTAATTTCTTCACGCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(394-486)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-384)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A510IQB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.326

99.799

0.542
  comM Vibrio campbellii strain DS40M4

53.924

99.799

0.538
  comM Haemophilus influenzae Rd KW20

53.293

100

0.536
  comM Glaesserella parasuis strain SC1401

52.295

100

0.526
  comM Legionella pneumophila str. Paris

50.806

99.598

0.506
  comM Legionella pneumophila strain ERS1305867

50.806

99.598

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.14

100

0.48

Multiple sequence alignment