Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QDY56_RS23260 Genome accession   NZ_CP122648
Coordinates   4700125..4700631 (-) Length   168 a.a.
NCBI ID   WP_096955297.1    Uniprot ID   -
Organism   Escherichia coli strain ETEC4077     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4695125..4705631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDY56_RS23240 (QDY56_23240) soxR 4696854..4697318 (-) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -
  QDY56_RS23245 (QDY56_23245) soxS 4697404..4697727 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  QDY56_RS23250 (QDY56_23250) pdeC 4697730..4699316 (-) 1587 WP_001550430.1 c-di-GMP phosphodiesterase PdeC -
  QDY56_RS23255 (QDY56_23255) yjcB 4699745..4700026 (+) 282 WP_001295689.1 YjcB family protein -
  QDY56_RS23260 (QDY56_23260) ssb 4700125..4700631 (-) 507 WP_096955297.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QDY56_RS23265 (QDY56_23265) uvrA 4700886..4703708 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  QDY56_RS23270 (QDY56_23270) yjbR 4703743..4704099 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  QDY56_RS23275 (QDY56_23275) yjbQ 4704103..4704519 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QDY56_RS23280 (QDY56_23280) aphA 4704630..4705343 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 17910.87 Da        Isoelectric Point: 5.2358

>NTDB_id=741886 QDY56_RS23260 WP_096955297.1 4700125..4700631(-) (ssb) [Escherichia coli strain ETEC4077]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGNQFSGGAQSRPQQSAPAAPSNEPPM
DFDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=741886 QDY56_RS23260 WP_096955297.1 4700125..4700631(-) (ssb) [Escherichia coli strain ETEC4077]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
TGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCTCCGGCAGCACCGTCTAACGAGCCGCCGATG
GACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.446

100

0.774
  ssb Glaesserella parasuis strain SC1401

56.044

100

0.607
  ssb Neisseria meningitidis MC58

47.458

100

0.5
  ssb Neisseria gonorrhoeae MS11

47.458

100

0.5
  ssb Latilactobacillus sakei subsp. sakei 23K

33.889

100

0.363