Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QDW55_RS23210 Genome accession   NZ_CP122643
Coordinates   4690997..4691503 (-) Length   168 a.a.
NCBI ID   WP_096955297.1    Uniprot ID   -
Organism   Escherichia coli strain ETEC4079     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4685997..4696503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDW55_RS23190 (QDW55_23190) soxR 4687726..4688190 (-) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -
  QDW55_RS23195 (QDW55_23195) soxS 4688276..4688599 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  QDW55_RS23200 (QDW55_23200) pdeC 4688602..4690188 (-) 1587 WP_001550430.1 c-di-GMP phosphodiesterase PdeC -
  QDW55_RS23205 (QDW55_23205) yjcB 4690617..4690898 (+) 282 WP_001295689.1 YjcB family protein -
  QDW55_RS23210 (QDW55_23210) ssb 4690997..4691503 (-) 507 WP_096955297.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QDW55_RS23215 (QDW55_23215) uvrA 4691758..4694580 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  QDW55_RS23220 (QDW55_23220) yjbR 4694615..4694971 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  QDW55_RS23225 (QDW55_23225) yjbQ 4694975..4695391 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QDW55_RS23230 (QDW55_23230) aphA 4695502..4696215 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 17910.87 Da        Isoelectric Point: 5.2358

>NTDB_id=741806 QDW55_RS23210 WP_096955297.1 4690997..4691503(-) (ssb) [Escherichia coli strain ETEC4079]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGNQFSGGAQSRPQQSAPAAPSNEPPM
DFDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=741806 QDW55_RS23210 WP_096955297.1 4690997..4691503(-) (ssb) [Escherichia coli strain ETEC4079]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
TGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCTCCGGCAGCACCGTCTAACGAGCCGCCGATG
GACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.446

100

0.774
  ssb Glaesserella parasuis strain SC1401

56.044

100

0.607
  ssb Neisseria meningitidis MC58

47.458

100

0.5
  ssb Neisseria gonorrhoeae MS11

47.458

100

0.5
  ssb Latilactobacillus sakei subsp. sakei 23K

33.889

100

0.363