Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | VroAM7_RS14470 | Genome accession | NZ_AP019798 |
| Coordinates | 3076379..3076912 (-) | Length | 177 a.a. |
| NCBI ID | WP_143693008.1 | Uniprot ID | A0A510I8J2 |
| Organism | Vibrio rotiferianus strain AM7 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3071379..3081912
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VroAM7_RS14450 (VroAM7_27030) | - | 3071724..3072056 (-) | 333 | WP_138942194.1 | MSHA biogenesis protein MshK | - |
| VroAM7_RS14455 (VroAM7_27040) | gspM | 3072049..3072699 (-) | 651 | WP_143693005.1 | type II secretion system protein GspM | - |
| VroAM7_RS14460 (VroAM7_27050) | - | 3072696..3074144 (-) | 1449 | WP_143693006.1 | PilN domain-containing protein | - |
| VroAM7_RS14465 (VroAM7_27060) | csrD | 3074147..3076162 (-) | 2016 | WP_143693007.1 | RNase E specificity factor CsrD | - |
| VroAM7_RS14470 (VroAM7_27070) | ssb | 3076379..3076912 (-) | 534 | WP_143693008.1 | single-stranded DNA-binding protein | Machinery gene |
| VroAM7_RS14475 (VroAM7_27080) | qstR | 3077190..3077834 (+) | 645 | WP_143693009.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| VroAM7_RS14480 (VroAM7_27090) | galU | 3077942..3078814 (+) | 873 | WP_077262150.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| VroAM7_RS14485 (VroAM7_27100) | uvrA | 3078952..3081774 (+) | 2823 | WP_138942200.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 177 a.a. Molecular weight: 19828.79 Da Isoelectric Point: 4.9269
>NTDB_id=74138 VroAM7_RS14470 WP_143693008.1 3076379..3076912(-) (ssb) [Vibrio rotiferianus strain AM7]
MASRGVNKVIIMGNLGQDPEVKYSANGNAIANITVATSETWRDKATGEQREKTEWHRVALFGKTAEIAGEYLRRGSQVYL
EGQLQTRKWQDQNGQDRYTTEVVVQWPSGQMQLLGGRQGGAPMGAGQQQQQGGWGQPQQPAQQQYNAPQQQPQQQAPQQP
QQQYNEPPMDFDDDIPF
MASRGVNKVIIMGNLGQDPEVKYSANGNAIANITVATSETWRDKATGEQREKTEWHRVALFGKTAEIAGEYLRRGSQVYL
EGQLQTRKWQDQNGQDRYTTEVVVQWPSGQMQLLGGRQGGAPMGAGQQQQQGGWGQPQQPAQQQYNAPQQQPQQQAPQQP
QQQYNEPPMDFDDDIPF
Nucleotide
Download Length: 534 bp
>NTDB_id=74138 VroAM7_RS14470 WP_143693008.1 3076379..3076912(-) (ssb) [Vibrio rotiferianus strain AM7]
ATGGCCAGCCGTGGAGTAAACAAAGTCATCATCATGGGTAACCTAGGGCAAGACCCTGAGGTTAAATATAGTGCGAATGG
TAATGCAATCGCTAATATCACTGTTGCAACGTCTGAAACATGGCGTGATAAAGCGACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCGCTATTTGGTAAAACTGCAGAAATTGCAGGCGAGTACCTACGCAGGGGCTCTCAAGTTTATCTA
GAAGGCCAGCTTCAAACTCGTAAATGGCAAGACCAAAATGGTCAAGACCGCTACACGACAGAAGTAGTGGTTCAATGGCC
ATCGGGTCAGATGCAGTTATTGGGTGGTCGCCAAGGTGGCGCACCGATGGGTGCTGGTCAGCAACAGCAACAAGGTGGTT
GGGGTCAACCTCAGCAACCGGCTCAGCAGCAGTACAATGCTCCGCAGCAGCAACCTCAACAACAGGCTCCGCAGCAACCA
CAGCAGCAATACAATGAGCCGCCTATGGATTTTGATGACGATATTCCGTTCTAA
ATGGCCAGCCGTGGAGTAAACAAAGTCATCATCATGGGTAACCTAGGGCAAGACCCTGAGGTTAAATATAGTGCGAATGG
TAATGCAATCGCTAATATCACTGTTGCAACGTCTGAAACATGGCGTGATAAAGCGACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCGCTATTTGGTAAAACTGCAGAAATTGCAGGCGAGTACCTACGCAGGGGCTCTCAAGTTTATCTA
GAAGGCCAGCTTCAAACTCGTAAATGGCAAGACCAAAATGGTCAAGACCGCTACACGACAGAAGTAGTGGTTCAATGGCC
ATCGGGTCAGATGCAGTTATTGGGTGGTCGCCAAGGTGGCGCACCGATGGGTGCTGGTCAGCAACAGCAACAAGGTGGTT
GGGGTCAACCTCAGCAACCGGCTCAGCAGCAGTACAATGCTCCGCAGCAGCAACCTCAACAACAGGCTCCGCAGCAACCA
CAGCAGCAATACAATGAGCCGCCTATGGATTTTGATGACGATATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
73.626 |
100 |
0.757 |
| ssb | Glaesserella parasuis strain SC1401 |
50.521 |
100 |
0.548 |
| ssb | Neisseria gonorrhoeae MS11 |
45.556 |
100 |
0.463 |
| ssb | Neisseria meningitidis MC58 |
44.944 |
100 |
0.452 |