Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   BsBEST3145_RS04155 Genome accession   NZ_AP024625
Coordinates   819394..820110 (+) Length   238 a.a.
NCBI ID   WP_003233679.1    Uniprot ID   P39796
Organism   Bacillus subtilis strain BEST3109     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 814394..825110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BsBEST3145_RS04140 (BsBEST3109_07700) yfkQ 814471..816012 (-) 1542 WP_003233683.1 spore germination protein -
  BsBEST3145_RS04145 (BsBEST3109_07710) treP 816205..817617 (+) 1413 WP_003233682.1 PTS system trehalose-specific EIIBC component -
  BsBEST3145_RS04150 (BsBEST3109_07720) treC 817688..819373 (+) 1686 WP_003244272.1 alpha,alpha-phosphotrehalase -
  BsBEST3145_RS04155 (BsBEST3109_07730) treR 819394..820110 (+) 717 WP_003233679.1 trehalose operon repressor Regulator
  BsBEST3145_RS04160 (BsBEST3109_07740) hypO 820250..820915 (+) 666 WP_003243096.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27841.82 Da        Isoelectric Point: 7.1736

>NTDB_id=74139 BsBEST3145_RS04155 WP_003233679.1 819394..820110(+) (treR) [Bacillus subtilis strain BEST3109]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=74139 BsBEST3145_RS04155 WP_003233679.1 819394..820110(+) (treR) [Bacillus subtilis strain BEST3109]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTAGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2OGG

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416

Multiple sequence alignment