Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   OIO39_RS17550 Genome accession   NZ_CP107587
Coordinates   3627970..3628497 (-) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain 1326527-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3622970..3633497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO39_RS17530 (OIO39_17525) - 3623154..3624029 (-) 876 WP_000218802.1 hypothetical protein -
  OIO39_RS17535 (OIO39_17530) aroB 3624045..3625127 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  OIO39_RS17540 (OIO39_17535) aroK 3625156..3625725 (-) 570 WP_000643712.1 shikimate kinase AroK -
  OIO39_RS17545 (OIO39_17540) pilQ 3625737..3627902 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  OIO39_RS17550 (OIO39_17545) pilP 3627970..3628497 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  OIO39_RS17555 (OIO39_17550) pilO 3628508..3629248 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  OIO39_RS17560 (OIO39_17555) pilN 3629245..3629886 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  OIO39_RS17565 (OIO39_17560) pilM 3629886..3630944 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=741020 OIO39_RS17550 WP_000695065.1 3627970..3628497(-) (pilP) [Acinetobacter baumannii strain 1326527-2]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=741020 OIO39_RS17550 WP_000695065.1 3627970..3628497(-) (pilP) [Acinetobacter baumannii strain 1326527-2]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714