Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   OIO53_RS17445 Genome accession   NZ_CP107579
Coordinates   3620130..3620657 (-) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain 1326525-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3615130..3625657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO53_RS17425 (OIO53_17430) - 3615319..3616194 (-) 876 WP_031961395.1 hypothetical protein -
  OIO53_RS17430 (OIO53_17435) aroB 3616210..3617292 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  OIO53_RS17435 (OIO53_17440) aroK 3617321..3617890 (-) 570 WP_000643712.1 shikimate kinase AroK -
  OIO53_RS17440 (OIO53_17445) - 3617902..3620067 (-) 2166 Protein_3410 type IV pilus secretin PilQ -
  OIO53_RS17445 (OIO53_17450) pilP 3620130..3620657 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  OIO53_RS17450 (OIO53_17455) pilO 3620668..3621408 (-) 741 WP_000076106.1 type 4a pilus biogenesis protein PilO Machinery gene
  OIO53_RS17455 (OIO53_17460) pilN 3621405..3622046 (-) 642 WP_031961396.1 PilN domain-containing protein Machinery gene
  OIO53_RS17460 (OIO53_17465) pilM 3622046..3623104 (-) 1059 WP_031961398.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=740861 OIO53_RS17445 WP_000695065.1 3620130..3620657(-) (pilP) [Acinetobacter baumannii strain 1326525-1]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=740861 OIO53_RS17445 WP_000695065.1 3620130..3620657(-) (pilP) [Acinetobacter baumannii strain 1326525-1]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGCAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTTTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714