Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OF384_RS00610 Genome accession   NZ_CP107573
Coordinates   129916..131436 (-) Length   506 a.a.
NCBI ID   WP_264250188.1    Uniprot ID   -
Organism   Pantoea dispersa strain JL.02bL     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 124916..136436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OF384_RS00600 (OF384_00600) hdfR 128606..129427 (-) 822 WP_031279770.1 HTH-type transcriptional regulator HdfR -
  OF384_RS00605 (OF384_00605) - 129549..129887 (+) 339 WP_021507919.1 DUF413 domain-containing protein -
  OF384_RS00610 (OF384_00610) comM 129916..131436 (-) 1521 WP_264250188.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OF384_RS00615 (OF384_00615) ilvL 131765..131863 (+) 99 WP_071813600.1 ilv operon leader peptide -
  OF384_RS00620 (OF384_00620) ilvG 132013..133659 (+) 1647 WP_264250190.1 acetolactate synthase 2 catalytic subunit -
  OF384_RS00625 (OF384_00625) ilvM 133656..133913 (+) 258 WP_008106624.1 acetolactate synthase 2 small subunit -
  OF384_RS00630 (OF384_00630) - 133932..134861 (+) 930 WP_021507916.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54941.14 Da        Isoelectric Point: 7.8673

>NTDB_id=740738 OF384_RS00610 WP_264250188.1 129916..131436(-) (comM) [Pantoea dispersa strain JL.02bL]
MSLSKVLTRAALGVQAPLVTIEVHISNGLPALTLVGLPETTVKEARERVRSAIINSGFTFPAKRVTINLAPADLPKEGGR
YDLPIAIAILAASEQLPGDKLAHYEFLGELALNGALCGVQAAIPAAMAALQAGRQMVLAEQNQQDVGLIQQGETLVGKHL
VEICAFLHNQTALTVAHYQPETVPHEQQDLSDIIGQQQGRRALEITAAGGHNLLLLGPPGTGKTMLATRLPGIMPPLDDQ
EALECAAIASLVSSGTLHHQWRRRPFRAPHHSASLYALVGGGSLPRPGEISLAHNGVLFLDELPEFERKALDALREPIES
GEIAISRSRAKVTFPARFQLVGAMNPSPTGHYQGNHNRCTPQQVLRYLSRLSGPFLDRFDLSLEIPLLPGGSLSQKQQHS
ETSAQVRARVLAARAIQMARAGKVNAQLSNPEIARDCVLQQQDAEWLEEILNALGLSVRAWQRILKVARTIADLAGERQI
TRQHLQEAVGYRSIDRLLIYLHKSLE

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=740738 OF384_RS00610 WP_264250188.1 129916..131436(-) (comM) [Pantoea dispersa strain JL.02bL]
ATGTCTTTATCGAAAGTATTAACACGCGCGGCGCTCGGGGTGCAGGCTCCACTGGTGACGATTGAAGTGCATATCAGCAA
CGGTCTGCCAGCATTGACGCTGGTAGGTCTGCCGGAAACCACCGTCAAAGAAGCCCGCGAACGCGTGCGCAGCGCCATTA
TCAATAGCGGTTTCACCTTTCCGGCGAAGCGCGTCACCATTAACCTCGCGCCAGCTGATTTACCTAAAGAGGGTGGGCGC
TACGACCTGCCCATCGCTATCGCCATTCTCGCGGCCTCAGAGCAGCTGCCAGGCGATAAGCTGGCCCATTATGAGTTCCT
GGGTGAGCTGGCGCTAAACGGCGCGCTGTGTGGCGTTCAGGCCGCGATTCCTGCTGCCATGGCGGCGCTGCAGGCCGGAC
GTCAGATGGTCTTAGCGGAGCAGAATCAACAGGATGTCGGCCTGATACAACAGGGTGAAACGCTGGTGGGCAAGCATCTG
GTGGAGATCTGCGCTTTCCTGCATAACCAGACGGCGCTGACGGTCGCCCATTACCAGCCTGAAACGGTGCCGCACGAGCA
GCAGGACCTGAGCGATATTATTGGCCAGCAGCAGGGACGGCGCGCGCTGGAAATTACCGCCGCCGGTGGCCATAACCTGT
TGCTACTGGGCCCGCCCGGCACCGGTAAGACCATGCTGGCAACCCGATTGCCCGGCATTATGCCGCCGCTGGATGACCAG
GAAGCGCTGGAGTGCGCCGCAATTGCCAGCCTGGTTAGCAGCGGTACGCTACATCATCAGTGGCGTAGACGGCCGTTCAG
AGCGCCTCATCACAGCGCATCGCTGTATGCGCTGGTCGGCGGAGGATCCCTGCCGCGGCCGGGCGAAATTTCGCTGGCGC
ACAATGGGGTGCTGTTTCTTGATGAACTGCCCGAGTTTGAGCGTAAAGCGCTGGATGCGTTACGCGAACCGATTGAGTCC
GGTGAAATCGCCATTTCCCGTTCCCGCGCCAAAGTCACTTTCCCTGCACGCTTTCAGCTGGTTGGTGCAATGAATCCCAG
CCCGACGGGCCATTATCAGGGGAATCATAATCGCTGCACGCCGCAGCAGGTGCTGCGCTATCTCAGCCGGCTGTCTGGCC
CGTTCCTGGATCGCTTCGACCTGTCGCTGGAGATTCCGCTGCTACCGGGCGGCTCGCTCAGCCAGAAGCAGCAGCACAGC
GAAACCAGCGCGCAGGTGCGCGCACGTGTACTGGCCGCCCGGGCGATACAGATGGCACGCGCGGGCAAAGTGAATGCGCA
GCTGTCGAATCCGGAGATCGCCCGTGATTGTGTGTTACAGCAGCAGGACGCGGAATGGCTGGAGGAGATCCTGAATGCAC
TGGGATTATCGGTGCGTGCATGGCAGCGCATCTTAAAGGTGGCGAGAACCATCGCAGATTTAGCGGGTGAACGGCAGATT
ACGCGTCAGCATCTGCAGGAGGCGGTGGGATATCGCAGTATCGATCGTTTACTGATTTACCTGCATAAAAGCCTGGAATG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-388)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

62.624

99.407

0.623
  comM Glaesserella parasuis strain SC1401

61.829

99.407

0.615
  comM Vibrio cholerae strain A1552

61.753

99.209

0.613
  comM Vibrio campbellii strain DS40M4

60.956

99.209

0.605
  comM Legionella pneumophila str. Paris

47.887

98.221

0.47
  comM Legionella pneumophila strain ERS1305867

47.887

98.221

0.47
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.478

100

0.435