Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   OEG79_RS16545 Genome accession   NZ_CP107549
Coordinates   3453449..3454789 (+) Length   446 a.a.
NCBI ID   WP_264146046.1    Uniprot ID   -
Organism   Pseudomonas sp. Z8(2022)     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3448449..3459789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OEG79_RS16525 (OEG79_16525) rluD 3449114..3450088 (-) 975 WP_264146042.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  OEG79_RS16530 (OEG79_16530) - 3450442..3451434 (+) 993 WP_264146043.1 outer membrane protein assembly factor BamD -
  OEG79_RS16535 (OEG79_16535) - 3451628..3451864 (+) 237 WP_264146044.1 PP0621 family protein -
  OEG79_RS16540 (OEG79_16540) pilS 3451854..3453446 (+) 1593 WP_264146045.1 sensor histidine kinase Regulator
  OEG79_RS16545 (OEG79_16545) pilR 3453449..3454789 (+) 1341 WP_264146046.1 sigma-54-dependent transcriptional regulator Regulator
  OEG79_RS16550 (OEG79_16550) thiO 3454802..3455902 (-) 1101 WP_264146047.1 glycine oxidase ThiO -
  OEG79_RS16555 (OEG79_16555) - 3455986..3456489 (+) 504 WP_264146048.1 GspH/FimT family protein -
  OEG79_RS16560 (OEG79_16560) - 3456633..3457115 (+) 483 WP_264146049.1 GspH/FimT family pseudopilin -
  OEG79_RS16565 (OEG79_16565) pilV 3457124..3457681 (+) 558 WP_264146050.1 type IV pilus modification protein PilV Machinery gene
  OEG79_RS16570 (OEG79_16570) - 3457678..3458526 (+) 849 WP_264146051.1 PilW family protein -
  OEG79_RS16575 (OEG79_16575) - 3458523..3459149 (+) 627 WP_264146052.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49915.20 Da        Isoelectric Point: 5.4585

>NTDB_id=740587 OEG79_RS16545 WP_264146046.1 3453449..3454789(+) (pilR) [Pseudomonas sp. Z8(2022)]
MNRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTGLDLVQYIQQRHPQVPVAM
ITAYGSLDTAINSLKAGAFDFLTKPVDLGRLRELVATALRIRSPEGEETPVDSRLLGDSPPMKSLRKQIQKLSRSQAPVY
ISGESGSGKELVARLIHEQGPRVEQPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVVVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIAQLAEVM
LARLAEGTGLAAAKLHPDALEKLKNYRFPGNVRELENMLERAYTLCEDDQITPNDLRLADASGPGNESGEASLAQIDNLE
DYLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=740587 OEG79_RS16545 WP_264146046.1 3453449..3454789(+) (pilR) [Pseudomonas sp. Z8(2022)]
ATGAACCGTCAGAGAGCCCTGATCGTCGACGACGAACCCGATATCCGCGAACTGCTGGAAATCACCCTCGGACGCATGAA
GCTGGATACCCGCAGCGCCCGCAACGTCAAGGAAGCACGCGAGTGGCTGGCGCGCGAGCCCTTCGACCTGTGCCTGACCG
ACATGCGCCTACCCGACGGCACCGGCCTGGATCTGGTGCAGTACATCCAGCAGCGCCATCCGCAAGTCCCCGTGGCAATG
ATCACCGCCTATGGCAGCCTGGATACCGCGATCAACTCGCTCAAGGCCGGAGCCTTCGACTTCCTCACCAAGCCGGTAGA
CCTCGGCCGGCTGCGCGAACTGGTCGCCACCGCTCTGCGCATTCGCTCCCCCGAAGGAGAAGAAACTCCGGTCGACAGCC
GCCTGCTCGGCGACTCCCCGCCGATGAAGTCCCTGCGCAAGCAGATTCAGAAACTTTCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAATCGGGCAGCGGCAAGGAATTGGTGGCCCGTCTGATCCACGAACAGGGTCCTCGCGTCGAGCAGCCCTT
CGTCCCGGTCAACTGCGGCGCCATCCCCTCGGAGCTGATGGAGAGCGAGTTCTTCGGTCACAAGAAAGGCAGCTTCACCG
GCGCCATCGAAGACAAGCAGGGCCTATTCCAGGCAGCCAATGGTGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
CTGCCGATGCAGGTGAAGCTGCTGCGCGCCATCCAGGAAAAGGCCGTGCGTGCGGTCGGTGGTCAGCAGGAAGTGGTGGT
CGATGTACGCATCCTCTGCGCCACCCACAAGGACCTGGCCGCCGAAGTCGCCGCCGGGCGTTTCCGACAGGACCTCTACT
ATCGCCTCAACGTCATCGAACTGCGCGTACCGCCACTGCGCGAGCGCCGCGAGGACATCGCCCAGTTGGCCGAGGTGATG
CTCGCGCGCCTGGCCGAAGGCACCGGCCTTGCAGCAGCCAAACTGCACCCCGACGCACTGGAAAAACTGAAGAACTATCG
CTTCCCGGGCAATGTGCGCGAGCTGGAAAACATGCTCGAACGCGCCTACACCCTGTGCGAGGACGATCAGATCACTCCGA
ACGATCTGCGCCTGGCCGACGCCAGCGGTCCCGGTAACGAAAGTGGCGAAGCCAGCCTGGCGCAGATCGACAACCTCGAG
GACTACCTCGAGGACATCGAACGCAAGCTGATCATGCAGGCATTGGAAGAAACCCGCTGGAACCGCACCGCCGCGGCCCA
GCGCCTGGGCCTGACCTTCCGCTCAATGCGTTATCGCCTGAAGAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

89.462

100

0.895
  pilR Acinetobacter baumannii strain A118

49.13

100

0.507
  luxO Vibrio cholerae strain A1552

38.117

100

0.381