Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   OEG79_RS16565 Genome accession   NZ_CP107549
Coordinates   3457124..3457681 (+) Length   185 a.a.
NCBI ID   WP_264146050.1    Uniprot ID   -
Organism   Pseudomonas sp. Z8(2022)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3452124..3462681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OEG79_RS16545 (OEG79_16545) pilR 3453449..3454789 (+) 1341 WP_264146046.1 sigma-54-dependent transcriptional regulator Regulator
  OEG79_RS16550 (OEG79_16550) thiO 3454802..3455902 (-) 1101 WP_264146047.1 glycine oxidase ThiO -
  OEG79_RS16555 (OEG79_16555) - 3455986..3456489 (+) 504 WP_264146048.1 GspH/FimT family protein -
  OEG79_RS16560 (OEG79_16560) - 3456633..3457115 (+) 483 WP_264146049.1 GspH/FimT family pseudopilin -
  OEG79_RS16565 (OEG79_16565) pilV 3457124..3457681 (+) 558 WP_264146050.1 type IV pilus modification protein PilV Machinery gene
  OEG79_RS16570 (OEG79_16570) - 3457678..3458526 (+) 849 WP_264146051.1 PilW family protein -
  OEG79_RS16575 (OEG79_16575) - 3458523..3459149 (+) 627 WP_264146052.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20047.58 Da        Isoelectric Point: 4.2998

>NTDB_id=740588 OEG79_RS16565 WP_264146050.1 3457124..3457681(+) (pilV) [Pseudomonas sp. Z8(2022)]
MSNNKGFSLIEVLVALLLTTVGVLGMVALQGRSIQYTQDSVQRNTAVSLANELIEIARANPQALYNSPAPKFPINSGMKE
DSLFYKEKGEDFADREACVTSTTRLAETPKEQRDCWADKVEAMLPGGATVFESESSICRSSTPGDCDGAGSMLEIRLAWQ
VRDGACLNADDPDSTVCTYTVRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=740588 OEG79_RS16565 WP_264146050.1 3457124..3457681(+) (pilV) [Pseudomonas sp. Z8(2022)]
ATGAGCAATAACAAAGGTTTCAGCCTCATCGAGGTATTGGTCGCCCTCTTGCTGACCACTGTTGGCGTGCTCGGCATGGT
TGCCTTGCAAGGACGCAGCATTCAGTACACACAGGATTCAGTTCAGCGCAACACGGCCGTTTCGCTGGCTAACGAGTTGA
TTGAAATAGCTCGGGCAAATCCGCAAGCGCTTTACAACTCACCGGCCCCGAAGTTCCCGATCAACAGCGGAATGAAAGAA
GACTCTCTCTTTTACAAAGAGAAAGGCGAAGACTTCGCAGACCGAGAAGCGTGCGTCACCAGCACAACACGCCTTGCCGA
AACACCGAAAGAGCAGCGCGACTGCTGGGCCGACAAGGTCGAAGCGATGCTGCCTGGCGGAGCCACAGTATTCGAGAGCG
AGTCCAGCATCTGCCGCAGCTCAACCCCTGGCGACTGTGACGGTGCAGGCTCCATGCTCGAAATTCGCCTCGCCTGGCAG
GTGCGTGACGGCGCCTGCCTAAATGCTGATGACCCGGACTCCACCGTATGCACCTACACCGTTAGGGTAGAACCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

50.27

100

0.503