Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QC807_RS17025 Genome accession   NZ_CP122492
Coordinates   3507706..3508311 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain a15     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3502706..3513311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QC807_RS17005 aes 3502847..3503806 (+) 960 WP_000801838.1 acetyl esterase -
  QC807_RS17010 hemH 3503803..3504765 (-) 963 WP_001250120.1 ferrochelatase -
  QC807_RS17015 adk 3504897..3505541 (-) 645 WP_001345715.1 adenylate kinase -
  QC807_RS17020 htpG 3505722..3507596 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  QC807_RS17025 recR 3507706..3508311 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QC807_RS17030 ybaB 3508311..3508640 (-) 330 WP_001442196.1 YbaB/EbfC family nucleoid-associated protein -
  QC807_RS17035 dnaX 3508693..3510624 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  QC807_RS17040 apt 3510753..3511304 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QC807_RS17045 ybaN 3511457..3511834 (-) 378 WP_001188905.1 DUF454 family protein -
  QC807_RS17050 priC 3511904..3512431 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  QC807_RS17055 rsmS 3512445..3512606 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=740586 QC807_RS17025 WP_001195025.1 3507706..3508311(-) (recR) [Escherichia coli strain a15]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=740586 QC807_RS17025 WP_001195025.1 3507706..3508311(-) (recR) [Escherichia coli strain a15]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443