Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RxyAA322_RS02370 Genome accession   NZ_AP019791
Coordinates   451784..452995 (-) Length   403 a.a.
NCBI ID   WP_143526742.1    Uniprot ID   -
Organism   Rubrobacter xylanophilus strain AA3-22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 446784..457995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RxyAA322_RS02335 (RxyAA322_04660) - 446852..447316 (-) 465 WP_172620624.1 RDD family protein -
  RxyAA322_RS02340 (RxyAA322_04670) - 447405..447839 (-) 435 WP_143526736.1 type II secretion system protein -
  RxyAA322_RS02345 (RxyAA322_04680) - 447964..449403 (-) 1440 WP_143526737.1 hypothetical protein -
  RxyAA322_RS02350 (RxyAA322_04690) - 449424..449996 (-) 573 WP_143526738.1 hypothetical protein -
  RxyAA322_RS02355 (RxyAA322_04700) - 449993..450418 (-) 426 WP_172620625.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  RxyAA322_RS02360 (RxyAA322_04710) - 450411..450986 (-) 576 WP_143526740.1 GspH/FimT family pseudopilin -
  RxyAA322_RS02365 (RxyAA322_04720) - 450999..451769 (-) 771 WP_143526741.1 sigma-70 family RNA polymerase sigma factor -
  RxyAA322_RS02370 (RxyAA322_04730) pilC 451784..452995 (-) 1212 WP_143526742.1 type II secretion system F family protein Machinery gene
  RxyAA322_RS02375 (RxyAA322_04740) pilT 452995..454092 (-) 1098 WP_143526743.1 type IV pilus twitching motility protein PilT Machinery gene
  RxyAA322_RS02380 (RxyAA322_04750) - 454089..455798 (-) 1710 WP_143526744.1 ATPase, T2SS/T4P/T4SS family -
  RxyAA322_RS02385 (RxyAA322_04760) - 456050..457165 (+) 1116 WP_143526745.1 type IV pilus twitching motility protein PilT -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 43710.58 Da        Isoelectric Point: 9.2386

>NTDB_id=74021 RxyAA322_RS02370 WP_143526742.1 451784..452995(-) (pilC) [Rubrobacter xylanophilus strain AA3-22]
MGVFAYKARDRRGRLVRDTVEGSDPMAVAAALRSQGLLVIEVKEQGIGQKDLLEPFKRVRLGDLVVFTRQLATMINAGLP
IVRALHILAEQTTNKKLRDVVEKVRADVEAGMALSEALERHPEVFGRLYVEMVRAGEVGGVLDQVLLRVASQLEKDQELR
RKIKSALAYPAVVLVAAVLAAAFMLIFIVPIFARMFEDLGGTLPLPTRIAMGVSDLLTGFGGLALAGALAGGGFLFVRWI
RTEEGRKVWGRAVLRIPLRIGDTVQKGVLARFARTLGSLVAAGVPILQAIEITATSSGNWVVENALLKSRDAIREGQPLH
RPLEGEGVFPPMVTRMVAIGEETGDLEGMLGKIADFYESEVEAAVKALTSIIEPVMIVVVGGIVGGIIISMYLPMFRIFE
LIE

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=74021 RxyAA322_RS02370 WP_143526742.1 451784..452995(-) (pilC) [Rubrobacter xylanophilus strain AA3-22]
GTGGGCGTCTTCGCATACAAGGCCCGCGACCGCCGGGGACGGCTCGTCCGGGACACCGTGGAGGGTTCGGACCCGATGGC
GGTAGCGGCGGCGCTGCGCAGTCAGGGGCTCCTGGTCATCGAGGTCAAGGAGCAGGGCATCGGGCAGAAGGACCTTTTGG
AGCCCTTCAAGCGGGTGCGGCTGGGGGACCTCGTGGTCTTCACCCGGCAGCTCGCCACCATGATCAACGCCGGGCTGCCC
ATCGTGCGGGCGCTCCACATCCTCGCCGAGCAGACCACCAACAAGAAGCTCCGGGACGTCGTGGAGAAGGTGCGTGCGGA
CGTGGAGGCCGGGATGGCGCTCTCGGAGGCGCTGGAGCGGCACCCGGAGGTCTTCGGGCGGCTGTACGTGGAGATGGTGC
GGGCCGGGGAGGTCGGCGGGGTGCTGGACCAGGTGCTCCTCAGGGTCGCCTCCCAGCTGGAGAAGGATCAGGAGCTGCGG
CGCAAGATAAAGAGCGCCCTCGCCTACCCGGCGGTGGTGCTGGTGGCGGCGGTGCTCGCCGCGGCGTTCATGCTGATCTT
CATCGTCCCCATCTTCGCCCGGATGTTCGAGGATTTGGGCGGGACGCTCCCGCTGCCCACCCGGATCGCCATGGGCGTCT
CCGACCTCCTCACCGGCTTCGGCGGGCTCGCCCTGGCGGGGGCGCTAGCGGGCGGGGGCTTCCTGTTTGTGCGCTGGATC
CGGACCGAGGAGGGCCGGAAGGTCTGGGGACGGGCCGTACTCCGGATTCCGCTCAGGATCGGGGATACCGTCCAGAAGGG
GGTGCTCGCCCGCTTCGCCCGCACGCTCGGCTCGCTCGTCGCCGCCGGGGTTCCCATCCTGCAGGCCATAGAGATCACCG
CGACCTCCTCCGGCAACTGGGTGGTCGAGAACGCGCTGCTGAAGAGCCGTGACGCCATCCGGGAGGGCCAGCCGCTCCAC
CGGCCGCTGGAGGGCGAGGGCGTCTTCCCCCCGATGGTCACCCGGATGGTCGCCATCGGCGAGGAGACAGGAGATCTGGA
GGGGATGCTCGGCAAGATAGCCGACTTCTACGAGTCCGAGGTGGAGGCGGCGGTCAAGGCCCTCACCTCCATCATAGAGC
CGGTCATGATCGTGGTCGTCGGGGGGATCGTGGGCGGGATCATCATCTCCATGTACCTGCCGATGTTCAGGATCTTCGAG
CTCATCGAGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(272-394)

Type II secretion system (T2SS), protein F (T2SSF)

(67-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Thermus thermophilus HB27

49.628

100

0.496
  pilC Acinetobacter baylyi ADP1

38.903

99.504

0.387
  pilC Legionella pneumophila strain ERS1305867

38.191

98.759

0.377
  pilC Pseudomonas stutzeri DSM 10701

37.437

98.759

0.37

Multiple sequence alignment