Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   OFU58_RS18220 Genome accession   NZ_CP107289
Coordinates   3749255..3750388 (+) Length   377 a.a.
NCBI ID   WP_068929862.1    Uniprot ID   -
Organism   Acinetobacter pittii strain BM4623     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3744255..3755388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFU58_RS18195 (OFU58_18200) - 3744515..3744721 (-) 207 WP_068531148.1 DUF4199 domain-containing protein -
  OFU58_RS18200 (OFU58_18205) oprC 3744771..3746885 (-) 2115 WP_280586380.1 TonB-dependent copper receptor -
  OFU58_RS18205 (OFU58_18210) - 3746958..3747383 (-) 426 WP_069035867.1 DUF2946 family protein -
  OFU58_RS18210 (OFU58_18215) def 3747427..3747957 (-) 531 WP_002114101.1 peptide deformylase -
  OFU58_RS18215 (OFU58_18220) tsaP 3748080..3749234 (+) 1155 WP_280586383.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  OFU58_RS18220 (OFU58_18225) dprA 3749255..3750388 (+) 1134 WP_068929862.1 DNA-processing protein DprA Machinery gene
  OFU58_RS18225 (OFU58_18230) yrdC 3750440..3751009 (+) 570 WP_005072030.1 Sua5/YciO/YrdC/YwlC family protein -
  OFU58_RS18230 (OFU58_18235) - 3751402..3752322 (-) 921 WP_002114137.1 DMT family transporter -
  OFU58_RS18235 (OFU58_18240) - 3752426..3753079 (-) 654 WP_078220007.1 TetR/AcrR family transcriptional regulator -
  OFU58_RS18240 (OFU58_18245) nepI 3753214..3754428 (+) 1215 WP_280586394.1 MFS transporter -
  OFU58_RS18245 (OFU58_18250) yeaM 3754450..3755214 (+) 765 WP_069121950.1 helix-turn-helix transcriptional regulator -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41864.38 Da        Isoelectric Point: 6.6660

>NTDB_id=739363 OFU58_RS18220 WP_068929862.1 3749255..3750388(+) (dprA) [Acinetobacter pittii strain BM4623]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIVDYFGSCEKAVQPAGLSQWRNLGLHANHLKRVDEFRTAQGQAQFERLTEQI
QQHTDFILTADDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYVSSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDSTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQQNSTEEAVVSSTPEI
PEHLINLYQSLDWVGQNIDQLVLHHSQPVAELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=739363 OFU58_RS18220 WP_068929862.1 3749255..3750388(+) (dprA) [Acinetobacter pittii strain BM4623]
ATGCTTACTCAACTTTCTTCACACCATTACCACACGCTTAAAGTGTGGTATTTGGTGCAACACTCTTTAGTCAGCTTTAA
AAAAATTGTCGATTATTTTGGTAGCTGTGAAAAGGCGGTCCAACCTGCTGGATTATCTCAATGGCGCAATCTCGGGTTAC
ATGCTAATCATTTAAAACGCGTAGATGAATTTCGAACTGCTCAGGGTCAAGCTCAGTTTGAAAGACTAACTGAGCAAATC
CAGCAACATACCGACTTTATTTTAACGGCAGATGACTCAGGCTATCCCACTCAGTTATTACCTTATACAGATCACCCACC
TATCATTTTTGGAAAAGGTCAGGCACAAGCCTTATTACAACCACAAATTGCGATTGTAGGTAGCCGAAAACCAAGCCCAC
ATGGTCGTCAGGTTGCTTATGATTTTGCCTATTACTTAAGTGAAAAAGGTTTTTATGTAAGTAGTGGCTTGGCATATGGC
ATTGATGAAGCTGCTCACCAAGGAGCATCAGCACATCAACGTACAATTGCAGTAACAGGAACTGGTTTAGACAGTACCTA
CCCTGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAATGGCGCGATTATTACTGAATTTTTGCCTGGAACAC
CCCCATTACAACAGCATTTCCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTGTTAGTGGTAGAAGCTACC
TTAAAAAGTGGTTCTCTCATCACTGCGAACAAAGCTGCCGAACAAGGTAAGACTGTATTTGCCATTCCTGGTCATATTTA
CAGTGAGTTTCATCAAGGTTGCCATCAACTTATTCGTGAAGGAGCAATTTTAGTCGATCATCCTGAACAAATTATTGAAG
ACCTTGCTTTACCCACCCAGTGGCAAAGTCAGCAACAAAACTCCACCGAGGAGGCTGTAGTTTCTAGTACTCCAGAAATT
CCTGAGCATTTAATTAACCTTTATCAATCTTTAGACTGGGTTGGACAAAATATTGATCAGCTTGTCTTACATCACTCTCA
GCCTGTTGCAGAACTCACCTCTTCACTGATGGAACTAGAACTACTTGGTTTATGTATGCAACAATCAGGATTGTATTTAC
GTTGTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

91.247

100

0.912

  dprA Acinetobacter baumannii strain A118

90.716

100

0.907

  dprA Acinetobacter baylyi ADP1

71.391

100

0.721

  dprA Vibrio cholerae strain A1552

43.844

88.329

0.387