Detailed information    

insolico Bioinformatically predicted

Overview


Name   tsaP   Type   Machinery gene
Locus tag   OFU58_RS18215 Genome accession   NZ_CP107289
Coordinates   3748080..3749234 (+) Length   384 a.a.
NCBI ID   WP_280586383.1    Uniprot ID   -
Organism   Acinetobacter pittii strain BM4623     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 3743080..3754234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFU58_RS18190 (OFU58_18195) - 3743233..3744447 (+) 1215 WP_280586377.1 oxygenase MpaB family protein -
  OFU58_RS18195 (OFU58_18200) - 3744515..3744721 (-) 207 WP_068531148.1 DUF4199 domain-containing protein -
  OFU58_RS18200 (OFU58_18205) oprC 3744771..3746885 (-) 2115 WP_280586380.1 TonB-dependent copper receptor -
  OFU58_RS18205 (OFU58_18210) - 3746958..3747383 (-) 426 WP_069035867.1 DUF2946 family protein -
  OFU58_RS18210 (OFU58_18215) def 3747427..3747957 (-) 531 WP_002114101.1 peptide deformylase -
  OFU58_RS18215 (OFU58_18220) tsaP 3748080..3749234 (+) 1155 WP_280586383.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  OFU58_RS18220 (OFU58_18225) dprA 3749255..3750388 (+) 1134 WP_068929862.1 DNA-processing protein DprA Machinery gene
  OFU58_RS18225 (OFU58_18230) yrdC 3750440..3751009 (+) 570 WP_005072030.1 Sua5/YciO/YrdC/YwlC family protein -
  OFU58_RS18230 (OFU58_18235) - 3751402..3752322 (-) 921 WP_002114137.1 DMT family transporter -
  OFU58_RS18235 (OFU58_18240) - 3752426..3753079 (-) 654 WP_078220007.1 TetR/AcrR family transcriptional regulator -

Sequence


Protein


Download         Length: 384 a.a.        Molecular weight: 42683.53 Da        Isoelectric Point: 7.0716

>NTDB_id=739362 OFU58_RS18215 WP_280586383.1 3748080..3749234(+) (tsaP) [Acinetobacter pittii strain BM4623]
MKKVFDGMVQFHALGIKKHLLALALFTGVAFSTVAETYAASPNHNPPSLRSNAPHVYIVKRGDTLWDISGHFLSKPWRWP
EIWANNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQMTNLQPQIRVESLNNNVPVIPLEHIKQWLE
HSTILPIDAIQHTPYVVGTADQRVLAAKGQTIYARGQGLIDGQRYAVYREGEPYYFTDNKGKKHSLGIELQQVASGIAIS
SEKDITTLELTDSYNSEVRRGDRVMPEEEATLPTLFYPVDATQVTDGGKIIRVMGSIGTAAQNSVVTLDRGTAQGIQVGQ
VFDITQQGETIRDPKTKEPIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPVKVGSSIQPPRFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=739362 OFU58_RS18215 WP_280586383.1 3748080..3749234(+) (tsaP) [Acinetobacter pittii strain BM4623]
ATGAAAAAGGTTTTTGACGGCATGGTTCAATTTCATGCTTTGGGGATAAAAAAGCATTTACTTGCTTTGGCACTTTTTAC
AGGGGTTGCATTCAGTACGGTAGCAGAGACTTATGCTGCTAGTCCGAACCATAATCCACCCTCTCTTAGAAGTAATGCAC
CACATGTCTACATAGTAAAACGAGGAGATACGCTATGGGATATTTCCGGTCACTTTCTGAGTAAACCTTGGCGCTGGCCT
GAAATTTGGGCAAATAATCAGCATGTCAAAAATCCACACTGGATTTATCCAGGTGATCGATTACTGCTGTGTAGTTTAGA
TGGCCGTCCATTGGTTGGAAAAGATGAGGGAGATGGCTGTGTCGGCATTATTCGCCGTTACACAGGCCAAATGACAAATT
TACAACCTCAAATTCGTGTGGAGTCACTTAACAATAACGTACCTGTTATTCCTCTTGAGCATATCAAACAATGGTTAGAA
CACAGCACTATTCTACCTATCGATGCAATTCAACATACTCCTTATGTAGTCGGTACTGCCGATCAACGTGTACTGGCGGC
AAAAGGTCAAACTATTTATGCACGCGGACAAGGTTTAATTGATGGTCAACGTTATGCAGTTTATCGTGAAGGCGAACCTT
ATTATTTCACCGATAATAAAGGCAAAAAGCACAGTCTAGGTATTGAGTTACAACAAGTTGCCTCAGGGATTGCAATCTCT
TCTGAAAAAGACATTACCACGCTTGAGTTAACTGATAGCTACAATTCTGAAGTACGTCGTGGTGATCGGGTGATGCCAGA
AGAAGAAGCAACATTACCTACTTTGTTTTATCCGGTGGATGCCACTCAGGTGACGGACGGCGGCAAAATTATTCGTGTAA
TGGGATCAATTGGTACTGCTGCCCAAAATAGTGTGGTGACTTTAGACCGCGGTACGGCACAAGGTATTCAAGTAGGACAA
GTTTTTGATATTACACAACAAGGTGAAACCATTCGAGATCCTAAAACCAAAGAACCAATACAGTTACCAGGACAACAAAT
TGGTAGTCTGATGGTCTTTAGAACTTTTGATCAGTTGAGTTATGCCTACGTATTAGAAAGCGATTTACCAGTTAAAGTTG
GTTCAAGCATTCAGCCACCCCGCTTTAATGATTAA

Domains


Predicted by InterproScan.

(57-102)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

89.323

100

0.893