Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OFU58_RS17985 Genome accession   NZ_CP107289
Coordinates   3700743..3702230 (+) Length   495 a.a.
NCBI ID   WP_280586338.1    Uniprot ID   -
Organism   Acinetobacter pittii strain BM4623     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3695743..3707230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFU58_RS17960 (OFU58_17965) ribD 3696695..3697780 (-) 1086 WP_280586336.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  OFU58_RS17965 (OFU58_17970) nrdR 3697796..3698254 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  OFU58_RS17970 (OFU58_17975) amtB 3698378..3699775 (-) 1398 WP_060466392.1 ammonium transporter -
  OFU58_RS17975 (OFU58_17980) glnK 3699833..3700171 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  OFU58_RS17980 (OFU58_17985) - 3700450..3700677 (+) 228 WP_002121136.1 accessory factor UbiK family protein -
  OFU58_RS17985 (OFU58_17990) comM 3700743..3702230 (+) 1488 WP_280586338.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OFU58_RS17990 (OFU58_17995) - 3702245..3703678 (-) 1434 WP_280586340.1 PLP-dependent aminotransferase family protein -
  OFU58_RS17995 (OFU58_18000) - 3703790..3704566 (+) 777 WP_002121159.1 aldolase -
  OFU58_RS18000 (OFU58_18005) - 3704582..3705460 (+) 879 WP_280586343.1 dihydrodipicolinate synthase family protein -
  OFU58_RS18005 (OFU58_18010) - 3705502..3706314 (-) 813 WP_017385855.1 TorF family putative porin -
  OFU58_RS18010 (OFU58_18015) - 3706353..3706541 (-) 189 WP_032063099.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54365.35 Da        Isoelectric Point: 7.3649

>NTDB_id=739361 OFU58_RS17985 WP_280586338.1 3700743..3702230(+) (comM) [Acinetobacter pittii strain BM4623]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIAIGILIASGQLPETCAEDFELIGELALDGHVRPVSGTLTLAMACQQAKHKMLLPLDNSQDISHLPNLECYPVSHL
KEVCDHFLGMKSLSSIEPATTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTAVRQRVISAYEQQMQRQDCLNQTLSPKQLEQYAVLDSTSQRMIEIAQQRLNLSARAYHRVLRVARTIADLAQSEVIQ
SSHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=739361 OFU58_RS17985 WP_280586338.1 3700743..3702230(+) (comM) [Acinetobacter pittii strain BM4623]
ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTAGGTTTACATGCACCTCTGATTGAGGTTGAGGTACATGTGAGTCA
AGGCTTACCTTCTCTTACTATTGTCGGCCTAGCAGAGGCAGCGGTAAGAGAAAGTAAAGACCGGGTTCGCTCAGCCATTA
TTAACAGTGGATTTCAATTTCCAACAAAACGGCTGACCATTAATCTTGCACCAGCAGATTTGCCCAAAGATGGTTCACGT
CTAGATTTACCTATTGCTATAGGTATTTTAATTGCATCTGGCCAGCTCCCAGAAACCTGTGCCGAAGATTTTGAATTAAT
TGGTGAATTAGCTTTAGATGGCCATGTAAGACCAGTGTCAGGTACTTTAACTTTGGCAATGGCGTGTCAACAGGCCAAGC
ATAAAATGCTTTTACCTCTCGATAATAGTCAGGATATTAGCCATTTACCGAATCTTGAATGTTATCCAGTGAGCCATTTA
AAAGAAGTCTGTGATCACTTCTTGGGCATGAAATCACTATCTTCGATTGAACCTGCAACTACCTCAAACCAAATGCCTTA
TAAATTTGATCTGGCAGATGTCAAAGGTCAGCTACGTCCACGTCGCGCACTAGAAATTGCCGCCGCAGGCGGGCACTCGC
TGCTCTTTAAAGGACCACCAGGTACAGGTAAGACTTTACTTGCTTCACGTCTTCCTTCAATTTTGCCACCGCTTTCTAAT
CAGGAAACGCTTGAAGTCGCGAGTATTTATTCTATTTCAAATACACCGCATACCTTTGGTCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCCATTGCACTAGTTGGGGGCGGTTCCCATCCTAAACCAGGTGAAATTACCTTATCTCATTTAG
GCGTTTTGTTTTTAGATGAACTCCCCGAGTTTGACAGAAAAGTTCTAGAAGTCTTACGTCAGCCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCAGCTCGGCAAATTACTTATCCTGCAAACTTTCAGCTCATTGCAGCAATGAACCCTTGTCCATG
TGGTTATGCGTTTAATCAAGACAGCCGTTGCCAATGTTCGCCAGAGAGTATCAAGCGCTATCAAAACCGTATATCGGGAC
CATTACTTGACCGTATCGATTTACATATTGATGTACCGCCTTTAAAAGCTCAAGAACTGCAAGATCCAACGCCTGCTGAA
GACTCTACGGCTGTAAGACAGCGTGTGATTTCTGCTTATGAGCAACAAATGCAAAGACAAGATTGTTTAAATCAAACACT
TTCACCCAAACAACTTGAGCAATATGCTGTACTTGATAGTACTTCTCAACGAATGATTGAAATTGCACAGCAACGTTTAA
ATCTATCGGCTCGTGCTTATCATCGTGTTTTACGAGTAGCTCGTACCATTGCCGATTTGGCTCAAAGTGAGGTCATTCAA
AGTTCTCATCTTACAGAGGCGCTCTCTTATCGAGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.403

100

0.505
  comM Glaesserella parasuis strain SC1401

49.9

100

0.503
  comM Legionella pneumophila str. Paris

49.598

100

0.499
  comM Legionella pneumophila strain ERS1305867

49.598

100

0.499
  comM Haemophilus influenzae Rd KW20

48.697

100

0.491
  comM Vibrio campbellii strain DS40M4

47.677

100

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.123

100

0.469