Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OFO16_RS13495 Genome accession   NZ_CP107282
Coordinates   2914398..2914937 (-) Length   179 a.a.
NCBI ID   WP_014233117.1    Uniprot ID   A0AAN1CWJ2
Organism   Vibrio natriegens strain PWH3a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2909398..2919937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFO16_RS13475 (OFO16_13475) - 2909722..2910054 (-) 333 WP_263837560.1 MSHA biogenesis protein MshK -
  OFO16_RS13480 (OFO16_13480) gspM 2910047..2910697 (-) 651 WP_176290989.1 type II secretion system protein GspM -
  OFO16_RS13485 (OFO16_13485) - 2910694..2912139 (-) 1446 WP_263837561.1 MSHA biogenesis protein MshI -
  OFO16_RS13490 (OFO16_13490) csrD 2912151..2914160 (-) 2010 WP_263837562.1 RNase E specificity factor CsrD -
  OFO16_RS13495 (OFO16_13495) ssb 2914398..2914937 (-) 540 WP_014233117.1 single-stranded DNA-binding protein Machinery gene
  OFO16_RS13500 (OFO16_13500) qstR 2915215..2915859 (+) 645 WP_263837563.1 LuxR C-terminal-related transcriptional regulator Regulator
  OFO16_RS13505 (OFO16_13505) galU 2916039..2916911 (+) 873 WP_263837564.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OFO16_RS13510 (OFO16_13510) uvrA 2917060..2919882 (+) 2823 WP_065302933.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19685.83 Da        Isoelectric Point: 5.2257

>NTDB_id=739280 OFO16_RS13495 WP_014233117.1 2914398..2914937(-) (ssb) [Vibrio natriegens strain PWH3a]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQAPQQGGWGQPQQPAQPQYNAPQQQAPKQSAPQ
QPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=739280 OFO16_RS13495 WP_014233117.1 2914398..2914937(-) (ssb) [Vibrio natriegens strain PWH3a]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAACCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCAACCTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACTG
AGTGGCACCGAGTTGTGCTGTTTGGCAAACTTGCTGAAGTTGCTGGCGAATACCTACGTAAAGGCTCACAAGTTTACGTT
GAAGGACAACTTCAAACGCGTAAATGGCAAGATCAGAGTGGTCAAGACCGTTACTCTACTGAAGTTGTGGTTCAGGGCTT
CAATGGCGTAATGCAAATGCTGGGTGGTCGCGCTCAAGGTGGCGCTCCTGCTATGGGTGGCCAGGCACCTCAGCAAGGTG
GTTGGGGTCAGCCTCAGCAACCAGCTCAGCCGCAATACAATGCGCCTCAGCAACAGGCTCCAAAGCAATCGGCTCCACAA
CAGCCTCAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.328

100

0.821
  ssb Glaesserella parasuis strain SC1401

56.614

100

0.598
  ssb Neisseria meningitidis MC58

46.667

100

0.469
  ssb Neisseria gonorrhoeae MS11

46.667

100

0.469