Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   OFO16_RS13500 Genome accession   NZ_CP107282
Coordinates   2915215..2915859 (+) Length   214 a.a.
NCBI ID   WP_263837563.1    Uniprot ID   -
Organism   Vibrio natriegens strain PWH3a     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2910215..2920859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFO16_RS13485 (OFO16_13485) - 2910694..2912139 (-) 1446 WP_263837561.1 MSHA biogenesis protein MshI -
  OFO16_RS13490 (OFO16_13490) csrD 2912151..2914160 (-) 2010 WP_263837562.1 RNase E specificity factor CsrD -
  OFO16_RS13495 (OFO16_13495) ssb 2914398..2914937 (-) 540 WP_014233117.1 single-stranded DNA-binding protein Machinery gene
  OFO16_RS13500 (OFO16_13500) qstR 2915215..2915859 (+) 645 WP_263837563.1 LuxR C-terminal-related transcriptional regulator Regulator
  OFO16_RS13505 (OFO16_13505) galU 2916039..2916911 (+) 873 WP_263837564.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OFO16_RS13510 (OFO16_13510) uvrA 2917060..2919882 (+) 2823 WP_065302933.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24517.50 Da        Isoelectric Point: 9.8717

>NTDB_id=739281 OFO16_RS13500 WP_263837563.1 2915215..2915859(+) (qstR) [Vibrio natriegens strain PWH3a]
MKTSAYARKLFLISMQENAPQKVAALEKYIEIDIPVISTDVLMEAKPKHRNKILLIDFSEHKSLIQSIKNLPLVWKNFET
VVFNVPKRLTTDELLSFGQLKGVFYADESLERIGEGLKGIINGQNWLPRNVSSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQNGASNSRMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=739281 OFO16_RS13500 WP_263837563.1 2915215..2915859(+) (qstR) [Vibrio natriegens strain PWH3a]
ATGAAAACGTCAGCTTACGCCAGAAAGCTATTTCTAATCAGTATGCAAGAGAATGCGCCCCAAAAGGTAGCGGCACTGGA
GAAGTATATCGAGATTGATATCCCAGTTATCTCGACGGATGTTTTAATGGAAGCGAAACCGAAACATCGTAATAAAATCT
TACTCATCGATTTCAGTGAACATAAATCGCTTATTCAGTCGATTAAAAACTTGCCACTGGTGTGGAAAAACTTTGAAACC
GTCGTTTTTAATGTCCCAAAACGCCTGACTACCGATGAGCTGCTCTCTTTCGGCCAGCTTAAAGGCGTATTCTATGCCGA
CGAATCGCTTGAACGAATTGGGGAAGGATTAAAAGGTATCATTAATGGCCAAAACTGGTTACCACGAAATGTGTCCAGCC
AGCTTCTTCATTACTACCGCAATGTGATCAATACTCATACCGCGCCAGCGACCGTGGACCTTACCATTCGGGAACTGCAG
GTATTGCGCTGTCTTCAAAATGGGGCATCAAATAGCCGAATGGCAGAAGAGTTGTTTGTCAGTGAGTTTACGATTAAGTC
TCACCTGTACCAAATTTTTAAAAAGCTTTCGGTTAAAAACCGCGTACAAGCGATTGCTTGGGCTGACCAGAATCTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

88.785

100

0.888
  qstR Vibrio campbellii strain DS40M4

87.383

100

0.874
  qstR Vibrio cholerae strain A1552

54.884

100

0.551