Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   OHM01_RS09100 Genome accession   NZ_CP107274
Coordinates   1732520..1733023 (+) Length   167 a.a.
NCBI ID   WP_263936388.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 1145734     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1727520..1738023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM01_RS09060 (OHM01_09060) pilE 1727977..1728405 (+) 429 WP_172763276.1 pilin Machinery gene
  OHM01_RS09065 (OHM01_09065) - 1728432..1728791 (+) 360 Protein_1746 pilin -
  OHM01_RS09070 (OHM01_09070) - 1728773..1729117 (+) 345 Protein_1747 pilin -
  OHM01_RS09080 (OHM01_09080) lpxC 1729619..1730542 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  OHM01_RS09085 (OHM01_09085) - 1730684..1731070 (+) 387 Protein_1749 pilin -
  OHM01_RS09090 (OHM01_09090) - 1731110..1731463 (+) 354 Protein_1750 pilin -
  OHM01_RS09100 (OHM01_09100) pilE 1732520..1733023 (+) 504 WP_263936388.1 pilin Machinery gene
  OHM01_RS09105 (OHM01_09105) - 1733567..1734358 (+) 792 WP_263936487.1 opacity family porin -
  OHM01_RS09110 (OHM01_09110) pilA 1734622..1735881 (-) 1260 WP_263936389.1 signal recognition particle-docking protein FtsY Machinery gene
  OHM01_RS09115 (OHM01_09115) msrAB 1736027..1737595 (+) 1569 WP_003687002.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18223.68 Da        Isoelectric Point: 6.7169

>NTDB_id=739141 OHM01_RS09100 WP_263936388.1 1732520..1733023(+) (pilE) [Neisseria gonorrhoeae strain 1145734]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGKWPADNGDAGVASPDKIK
GKYVKEVKVEKGVVTAEMKSDGVNKEIKDKKLSLWARRQDGSVKWFCGQPVTRTDDDDTVADAADKDTNGINTKHLPSTC
RDKHSDT

Nucleotide


Download         Length: 504 bp        

>NTDB_id=739141 OHM01_RS09100 WP_263936388.1 1732520..1733023(+) (pilE) [Neisseria gonorrhoeae strain 1145734]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCCGCCTACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TTACCGAGTATTACCTGAATCACGGCAAATGGCCCGCCGACAACGGTGATGCCGGCGTGGCATCCCCCGACAAAATCAAA
GGCAAATATGTTAAGGAAGTTAAAGTCGAAAAAGGCGTCGTTACCGCCGAAATGAAATCAGACGGCGTAAACAAAGAAAT
CAAAGACAAAAAACTCTCCCTGTGGGCCAGGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCA
CCGACGACGACGACACCGTTGCCGACGCCGCCGACAAAGACACCAACGGCATCAACACCAAGCACCTGCCGTCAACCTGC
CGCGATAAACACTCTGACACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-161)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

83.333

100

0.838
  pilE Neisseria gonorrhoeae MS11

83.832

100

0.838
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

32.804

100

0.371