Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   OHM01_RS09060 Genome accession   NZ_CP107274
Coordinates   1727977..1728405 (+) Length   142 a.a.
NCBI ID   WP_172763276.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 1145734     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1722977..1733405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM01_RS09030 (OHM01_09030) - 1723252..1724703 (-) 1452 WP_033909827.1 spermidine synthase -
  OHM01_RS09035 (OHM01_09035) - 1724726..1725346 (-) 621 WP_003696151.1 fused MFS/spermidine synthase -
  OHM01_RS09040 (OHM01_09040) - 1725545..1725921 (-) 377 Protein_1741 transposase -
  OHM01_RS09045 (OHM01_09045) - 1726230..1726355 (-) 126 Protein_1742 IS110 family transposase -
  OHM01_RS09050 (OHM01_09050) - 1726908..1727327 (+) 420 Protein_1743 pilin -
  OHM01_RS09055 (OHM01_09055) - 1727458..1727838 (+) 381 Protein_1744 pilin -
  OHM01_RS09060 (OHM01_09060) pilE 1727977..1728405 (+) 429 WP_172763276.1 pilin Machinery gene
  OHM01_RS09065 (OHM01_09065) - 1728432..1728791 (+) 360 Protein_1746 pilin -
  OHM01_RS09070 (OHM01_09070) - 1728773..1729117 (+) 345 Protein_1747 pilin -
  OHM01_RS09080 (OHM01_09080) lpxC 1729619..1730542 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  OHM01_RS09085 (OHM01_09085) - 1730684..1731070 (+) 387 Protein_1749 pilin -
  OHM01_RS09090 (OHM01_09090) - 1731110..1731463 (+) 354 Protein_1750 pilin -
  OHM01_RS09100 (OHM01_09100) pilE 1732520..1733023 (+) 504 WP_263936388.1 pilin Machinery gene

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15309.88 Da        Isoelectric Point: 9.0582

>NTDB_id=739140 OHM01_RS09060 WP_172763276.1 1727977..1728405(+) (pilE) [Neisseria gonorrhoeae strain 1145734]
MPTRLDSRLRGNDEAILLAEGQKSAVTEYYPNHGEWPKNNASAGVASSASDIKGKYVQSVTVANGVVTATMNSSGVNKEI
QGKKLSLWAKRQDGSVKWFCGRPVQRNANDANNDDVTADDKNNNGIDTKHLPSTCRDTSSAK

Nucleotide


Download         Length: 429 bp        

>NTDB_id=739140 OHM01_RS09060 WP_172763276.1 1727977..1728405(+) (pilE) [Neisseria gonorrhoeae strain 1145734]
GTGCCGACAAGGCTGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCCGAATCACGGCGAATGGCCGAAAAACAACGCTTCTGCCGGCGTGGCATCCTCCGCCTCCGACATCAAAG
GCAAATATGTTCAAAGCGTTACGGTCGCAAACGGCGTCGTCACCGCCACAATGAATTCAAGCGGCGTAAACAAAGAAATC
CAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACGGCCGGTTCAGCGCAA
CGCCAACGACGCCAACAACGACGACGTCACCGCCGACGACAAAAACAACAACGGCATCGACACCAAGCACCTGCCGTCAA
CCTGCCGTGATACGTCATCTGCCAAATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

72.535

100

0.725
  pilE Neisseria gonorrhoeae MS11

66.667

99.296

0.662