Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   OHM01_RS02685 Genome accession   NZ_CP107274
Coordinates   522308..522781 (+) Length   157 a.a.
NCBI ID   WP_012503482.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 1145734     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 517308..527781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM01_RS02660 (OHM01_02660) dnaB 517873..519279 (+) 1407 WP_263936422.1 replicative DNA helicase -
  OHM01_RS02665 (OHM01_02665) pilH 519434..520096 (+) 663 WP_263936423.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OHM01_RS02670 (OHM01_02670) pilI 520128..520739 (+) 612 WP_263936424.1 type IV pilus modification protein PilV Machinery gene
  OHM01_RS02675 (OHM01_02675) pilJ 520736..521716 (+) 981 WP_263936425.1 PilW family protein Machinery gene
  OHM01_RS02680 (OHM01_02680) pilK 521695..522306 (+) 612 WP_012503481.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OHM01_RS02685 (OHM01_02685) pilL 522308..522781 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  OHM01_RS02690 (OHM01_02690) - 522851..523159 (-) 309 WP_047920990.1 AzlD family protein -
  OHM01_RS02695 (OHM01_02695) - 523156..523867 (-) 712 Protein_522 AzlC family ABC transporter permease -
  OHM01_RS02700 (OHM01_02700) dut 524033..524485 (+) 453 WP_050164987.1 dUTP diphosphatase -
  OHM01_RS02705 (OHM01_02705) dapC 524557..525744 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  OHM01_RS02710 (OHM01_02710) yaaA 525900..526679 (+) 780 WP_003706583.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17486.30 Da        Isoelectric Point: 9.9561

>NTDB_id=739119 OHM01_RS02685 WP_012503482.1 522308..522781(+) (pilL) [Neisseria gonorrhoeae strain 1145734]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDNNQIIKSKLETFVLGYKM
NPKIAKKYSVSVAFANTEKPRAYRLVGVPKAGTGYTLSVWMNSVGDGYKCRNATSAQTYSETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=739119 OHM01_RS02685 WP_012503482.1 522308..522781(+) (pilL) [Neisseria gonorrhoeae strain 1145734]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACAATAATCAGATCATCAAGAGCAAACTGGAAACATTTGTCTTAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTGGCATTTGCCAATACGGAAAAACCAAGGGCATACAGGTTGGTCGG
CGTTCCGAAGGCAGGGACGGGTTATACCTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTAATGCCA
CTTCTGCCCAGACCTATTCGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

91.72

100

0.917
  pilX Neisseria meningitidis 8013

85.35

100

0.854