Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   OHM01_RS02680 Genome accession   NZ_CP107274
Coordinates   521695..522306 (+) Length   203 a.a.
NCBI ID   WP_012503481.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 1145734     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 516695..527306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM01_RS02655 (OHM01_02655) - 517128..517709 (-) 582 WP_003690895.1 superoxide dismutase -
  OHM01_RS02660 (OHM01_02660) dnaB 517873..519279 (+) 1407 WP_263936422.1 replicative DNA helicase -
  OHM01_RS02665 (OHM01_02665) pilH 519434..520096 (+) 663 WP_263936423.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OHM01_RS02670 (OHM01_02670) pilI 520128..520739 (+) 612 WP_263936424.1 type IV pilus modification protein PilV Machinery gene
  OHM01_RS02675 (OHM01_02675) pilJ 520736..521716 (+) 981 WP_263936425.1 PilW family protein Machinery gene
  OHM01_RS02680 (OHM01_02680) pilK 521695..522306 (+) 612 WP_012503481.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OHM01_RS02685 (OHM01_02685) pilL 522308..522781 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  OHM01_RS02690 (OHM01_02690) - 522851..523159 (-) 309 WP_047920990.1 AzlD family protein -
  OHM01_RS02695 (OHM01_02695) - 523156..523867 (-) 712 Protein_522 AzlC family ABC transporter permease -
  OHM01_RS02700 (OHM01_02700) dut 524033..524485 (+) 453 WP_050164987.1 dUTP diphosphatase -
  OHM01_RS02705 (OHM01_02705) dapC 524557..525744 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  OHM01_RS02710 (OHM01_02710) yaaA 525900..526679 (+) 780 WP_003706583.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22021.91 Da        Isoelectric Point: 8.0862

>NTDB_id=739118 OHM01_RS02680 WP_012503481.1 521695..522306(+) (pilK) [Neisseria gonorrhoeae strain 1145734]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNDNGNEEAFGNIVVQGKPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYKKGTGNVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=739118 OHM01_RS02680 WP_012503481.1 521695..522306(+) (pilK) [Neisseria gonorrhoeae strain 1145734]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GACAGTAAGGTTACGTTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATGATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

96.059

100

0.961