Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   OHM01_RS02665 Genome accession   NZ_CP107274
Coordinates   519434..520096 (+) Length   220 a.a.
NCBI ID   WP_263936423.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 1145734     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 514434..525096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM01_RS02640 (OHM01_02640) cysT 514701..515539 (-) 839 Protein_511 sulfate ABC transporter permease subunit CysT -
  OHM01_RS02645 (OHM01_02645) - 515725..516057 (+) 333 WP_003687908.1 hypothetical protein -
  OHM01_RS02650 (OHM01_02650) - 516387..516896 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  OHM01_RS02655 (OHM01_02655) - 517128..517709 (-) 582 WP_003690895.1 superoxide dismutase -
  OHM01_RS02660 (OHM01_02660) dnaB 517873..519279 (+) 1407 WP_263936422.1 replicative DNA helicase -
  OHM01_RS02665 (OHM01_02665) pilH 519434..520096 (+) 663 WP_263936423.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OHM01_RS02670 (OHM01_02670) pilI 520128..520739 (+) 612 WP_263936424.1 type IV pilus modification protein PilV Machinery gene
  OHM01_RS02675 (OHM01_02675) pilJ 520736..521716 (+) 981 WP_263936425.1 PilW family protein Machinery gene
  OHM01_RS02680 (OHM01_02680) pilK 521695..522306 (+) 612 WP_012503481.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OHM01_RS02685 (OHM01_02685) pilL 522308..522781 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  OHM01_RS02690 (OHM01_02690) - 522851..523159 (-) 309 WP_047920990.1 AzlD family protein -
  OHM01_RS02695 (OHM01_02695) - 523156..523867 (-) 712 Protein_522 AzlC family ABC transporter permease -
  OHM01_RS02700 (OHM01_02700) dut 524033..524485 (+) 453 WP_050164987.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24448.86 Da        Isoelectric Point: 9.4157

>NTDB_id=739115 OHM01_RS02665 WP_263936423.1 519434..520096(+) (pilH) [Neisseria gonorrhoeae strain 1145734]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGAPN
NRCDFSKKGRGMLAFGDKNGNKAYDNDTVDVFLRSVVLNDTDDSRINYAFNHIAFGSSQPTADRVVWTFNQNGTFGYLPD
QNLKDNSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 663 bp        

>NTDB_id=739115 OHM01_RS02665 WP_263936423.1 519434..520096(+) (pilH) [Neisseria gonorrhoeae strain 1145734]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGCCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGCGGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACAATGA
TACGGTAGATGTTTTCCTCCGCAGCGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTATGCCTTCAACCATATCG
CTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACGTTCAACCAAAACGGGACATTCGGCTATTTGCCCGAT
CAGAATCTCAAGGATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTC
AGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACGATA
CGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(44-204)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

99.545

100

0.995