Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   OHM05_RS10510 Genome accession   NZ_CP107272
Coordinates   2001669..2002856 (+) Length   395 a.a.
NCBI ID   WP_003690292.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 1130991     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1996669..2007856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM05_RS10495 (OHM05_10495) - 1997589..1998188 (+) 600 WP_003690290.1 DUF4390 domain-containing protein -
  OHM05_RS10500 (OHM05_10500) - 1998188..2000308 (+) 2121 WP_003690126.1 HAMP domain-containing histidine kinase -
  OHM05_RS10505 (OHM05_10505) - 2000301..2001578 (+) 1278 WP_003690124.1 sigma-54 dependent transcriptional regulator -
  OHM05_RS10510 (OHM05_10510) dprA 2001669..2002856 (+) 1188 WP_003690292.1 DNA-processing protein DprA Machinery gene
  OHM05_RS10515 (OHM05_10515) - 2002882..2003343 (+) 462 WP_003690120.1 DUF494 domain-containing protein -
  OHM05_RS10520 (OHM05_10520) topA 2003421..2005727 (+) 2307 WP_003694350.1 type I DNA topoisomerase -
  OHM05_RS10525 (OHM05_10525) - 2005814..2006610 (+) 797 Protein_2026 IS1595 family transposase -
  OHM05_RS10530 (OHM05_10530) - 2006705..2007556 (+) 852 WP_263946614.1 opacity family porin -

Sequence


Protein


Download         Length: 395 a.a.        Molecular weight: 41880.98 Da        Isoelectric Point: 6.3096

>NTDB_id=739101 OHM05_RS10510 WP_003690292.1 2001669..2002856(+) (dprA) [Neisseria gonorrhoeae strain 1130991]
MTEDERFAWLQLAFTPYIGAESFLLLMRSFGSAQNALSAPAEQVAPAVRHKHALEAWRNAEKRALARQAAEAALEWEMRD
GCRLMLLQDEDFPEMLTQGLTAPPVLFLRGNVRLLHKPSAAIVGSRHATPQAMRIAKDFGRALGGKGIPTVSGMASGIDT
AAHQGALEAEGGTIAVWGTGIDRIYPPANKNLAYEIAEKGLIVSEFPIGTRPYAGNFPRRNRLIAALSQVTLVVEAALES
GSLITAGLAAEMGREVMAVPGSIDNPHSKGCHKLIKDGAKLTECLDDILNECPGLLQNTGASSYSINKDTPDTGRRAVQT
AYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELELDGSVAAMPGGRYQRIRT

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=739101 OHM05_RS10510 WP_003690292.1 2001669..2002856(+) (dprA) [Neisseria gonorrhoeae strain 1130991]
ATGACAGAGGACGAACGTTTCGCGTGGCTGCAATTGGCGTTTACGCCCTATATCGGCGCGGAAAGTTTCCTGCTGCTGAT
GCGCAGTTTCGGCAGCGCGCAAAATGCCTTGTCCGCACCGGCGGAACAGGTTGCCCCGGCGGTGCGGCATAAGCACGCGC
TTGAGGCTTGGCGCAATGCGGAAAAACGCGCTTTGGCGCGGCAGGCGGCAGAAGCGGCGTTGGAATGGGAAATGCGGGAC
GGATGCCGCCTGATGCTGCTTCAGGATGAAGATTTCCCCGAAATGCTGACGCAGGGGCTGACCGCGCCGCCGGTTTTGTT
TTTGCGCGGCAACGTGCGGCTGCTGCACAAGCCTTCCGCCGCCATCGTCGGCAGCCGCCATGCCACGCCGCAGGCGATGC
GGATTGCCAAAGATTTCGGCAGGGCGTTGGGTGGGAAAGGCATTCCTACCGTGTCGGGTATGGCTTCGGGCATCGACACC
GCCGCCCATCAGGGCGCACTGGAGGCAGAAGGCGGCACCATCGCCGTGTGGGGGACGGGCATAGACCGCATTTATCCGCC
GGCCAACAAAAACCTTGCCTATGAAATCGCCGAAAAAGGGCTGATTGTCAGCGAGTTCCCCATCGGCACGCGGCCGTATG
CCGGCAACTTTCCGCGCCGCAACCGCCTGATTGCCGCGCTGTCGCAGGTTACGCTGGTGGTCGAGGCCGCCTTGGAATCC
GGTTCGCTGATTACCGCCGGCCTGGCGGCAGAAATGGGGCGCGAAGTGATGGCGGTACCCGGTTCGATAGACAACCCCCA
CAGCAAAGGCTGCCACAAACTGATTAAAGACGGAGCGAAACTGACGGAATGTTTGGACGACATCCTGAACGAATGCCCGG
GGCTATTGCAAAATACGGGTGCTTCGTCATATTCTATAAATAAGGATACGCCCGACACGGGCCGCCGCGCCGTTCAGACG
GCATACGCCCCGCCGCCTGCCGCAAAAATGCCGTCTGAAGGGGCGGCAGGCGGCACAGCCGTCGGCGGCATACTGGATAA
AATGGGTTTCGACCCCATCCATCCCGACGTGCTTGCCGGACAGTTGGCTATGCCTGCCGCAGATTTGTATGCCGCACTGT
TGGAATTGGAATTGGACGGCAGCGTTGCCGCCATGCCCGGCGGCAGATACCAGCGTATCCGAACTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae MS11

99.747

100

0.997

  dprA Neisseria gonorrhoeae strain FA1090

99.494

100

0.995

  dprA Neisseria meningitidis strain C311

90.176

100

0.906

  dprA Neisseria meningitidis MC58

90.176

100

0.906

  dprA Vibrio cholerae strain A1552

37.28

100

0.375