Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   OHM03_RS10010 Genome accession   NZ_CP107271
Coordinates   1898643..1899830 (-) Length   395 a.a.
NCBI ID   WP_020997408.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 1123850     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1893643..1904830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM03_RS09990 (OHM03_09990) - 1893984..1894787 (-) 804 WP_263955122.1 opacity family porin -
  OHM03_RS09995 (OHM03_09995) - 1894889..1895685 (-) 797 Protein_1920 IS1595 family transposase -
  OHM03_RS10000 (OHM03_10000) topA 1895772..1898078 (-) 2307 WP_041421399.1 type I DNA topoisomerase -
  OHM03_RS10005 (OHM03_10005) - 1898156..1898617 (-) 462 WP_003690120.1 DUF494 domain-containing protein -
  OHM03_RS10010 (OHM03_10010) dprA 1898643..1899830 (-) 1188 WP_020997408.1 DNA-processing protein DprA Machinery gene
  OHM03_RS10015 (OHM03_10015) - 1899921..1901198 (-) 1278 WP_003690124.1 sigma-54 dependent transcriptional regulator -
  OHM03_RS10020 (OHM03_10020) - 1901191..1903311 (-) 2121 WP_003690126.1 HAMP domain-containing histidine kinase -
  OHM03_RS10025 (OHM03_10025) - 1903311..1903910 (-) 600 WP_003690128.1 DUF4390 domain-containing protein -

Sequence


Protein


Download         Length: 395 a.a.        Molecular weight: 41911.00 Da        Isoelectric Point: 6.3096

>NTDB_id=739045 OHM03_RS10010 WP_020997408.1 1898643..1899830(-) (dprA) [Neisseria gonorrhoeae strain 1123850]
MTEDERFAWLQLAFTPYIGAESFLLLMRSFGSAQNALSAPAEQVAPAVRHKHALEAWRNAEKRALARQAAEAALEWEMRD
GCRLMLLQDEDFPEMLTQGLTAPPVLFLRGNVRLLHKPSAAIVGSRHATPQAMRIAKDFGRALGGKGIPTVSGMASGIDT
AAHQGALEAEGGTIAVWGTGIDRIYPPANKNLAYEIAEKGLIVSEFPIGTRPYAGNFPRRNRLIAALSQVTLVVEAALES
GSLITAGLAAEMGREVMAVPGSIDNPHSKGCHKLIKDGAKLTECLDDILNECPGLLQNTGASSYSINKDTPDTGRRTVQT
AYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELELDGSVAAMPGGRYQRIRT

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=739045 OHM03_RS10010 WP_020997408.1 1898643..1899830(-) (dprA) [Neisseria gonorrhoeae strain 1123850]
ATGACAGAGGACGAACGTTTCGCGTGGCTGCAATTGGCGTTTACGCCCTATATCGGCGCGGAAAGTTTCCTGCTGCTGAT
GCGCAGTTTCGGCAGCGCGCAAAATGCCTTGTCCGCACCGGCGGAACAGGTTGCCCCGGCGGTGCGGCATAAGCACGCGC
TTGAGGCTTGGCGCAATGCGGAAAAACGCGCTTTGGCGCGGCAGGCGGCAGAAGCGGCGTTGGAATGGGAAATGCGGGAC
GGATGCCGTCTGATGCTGCTTCAGGATGAAGATTTCCCCGAAATGCTGACGCAGGGGCTGACCGCGCCGCCGGTTTTGTT
TTTGCGCGGCAACGTGCGGCTGCTGCACAAGCCTTCCGCCGCCATCGTCGGCAGCCGCCATGCCACGCCGCAGGCGATGC
GGATTGCCAAAGATTTCGGCAGGGCGTTGGGTGGGAAAGGCATTCCTACCGTGTCGGGTATGGCTTCGGGCATCGACACC
GCCGCCCATCAGGGCGCACTGGAGGCAGAAGGCGGCACCATCGCCGTGTGGGGGACGGGCATAGACCGCATTTATCCGCC
GGCCAACAAAAACCTTGCCTATGAAATCGCCGAAAAAGGGCTGATTGTCAGCGAGTTCCCCATCGGCACGCGGCCGTATG
CCGGCAACTTTCCGCGCCGCAACCGCCTGATTGCCGCGCTGTCGCAGGTTACGCTGGTGGTCGAGGCCGCCTTGGAATCC
GGTTCGCTGATTACCGCCGGCCTGGCGGCAGAAATGGGGCGCGAAGTGATGGCGGTACCCGGTTCGATAGACAACCCCCA
CAGCAAAGGCTGCCACAAACTGATTAAAGACGGAGCGAAACTGACGGAATGTTTGGACGACATCCTGAACGAATGCCCGG
GGCTATTGCAAAATACGGGTGCTTCATCATATTCTATAAATAAGGATACGCCCGACACGGGCCGCCGCACCGTTCAGACG
GCATACGCCCCGCCGCCTGCCGCAAAAATGCCGTCTGAAGGGGCGGCAGGCGGCACAGCCGTCGGCGGCATACTGGATAA
AATGGGTTTCGACCCCATCCATCCCGACGTGCTTGCCGGACAGTTGGCTATGCCTGCCGCAGATTTGTATGCCGCACTGT
TGGAATTGGAATTGGACGGCAGCGTTGCCGCCATGCCCGGCGGCAGATACCAGCGTATCCGAACTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae MS11

100

100

1

  dprA Neisseria gonorrhoeae strain FA1090

99.241

100

0.992

  dprA Neisseria meningitidis strain C311

89.924

100

0.904

  dprA Neisseria meningitidis MC58

89.924

100

0.904

  dprA Vibrio cholerae strain A1552

36.709

100

0.367