Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N5937_RS12035 Genome accession   NZ_CP107262
Coordinates   2386239..2386766 (-) Length   175 a.a.
NCBI ID   WP_103177858.1    Uniprot ID   -
Organism   Leclercia adecarboxylata strain 2022CK-00320     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2381239..2391766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5937_RS12005 (N5937_12005) - 2381721..2382326 (+) 606 WP_263951605.1 NADPH-dependent F420 reductase -
  N5937_RS12010 (N5937_12010) - 2382336..2383217 (+) 882 WP_263951606.1 helix-turn-helix domain-containing protein -
  N5937_RS12015 (N5937_12015) - 2383319..2384065 (+) 747 WP_263951607.1 SDR family oxidoreductase -
  N5937_RS12020 (N5937_12020) - 2384118..2384327 (-) 210 WP_159340262.1 DUF1471 domain-containing protein -
  N5937_RS12025 (N5937_12025) - 2384453..2385175 (-) 723 WP_263951608.1 SDR family oxidoreductase -
  N5937_RS12030 (N5937_12030) - 2385274..2386167 (+) 894 WP_263951609.1 LysR family transcriptional regulator -
  N5937_RS12035 (N5937_12035) ssb 2386239..2386766 (-) 528 WP_103177858.1 single-stranded DNA-binding protein SSB1 Machinery gene
  N5937_RS12040 (N5937_12040) uvrA 2387018..2389843 (+) 2826 WP_159340265.1 excinuclease ABC subunit UvrA -
  N5937_RS12045 (N5937_12045) - 2389844..2390197 (-) 354 WP_103177856.1 MmcQ/YjbR family DNA-binding protein -
  N5937_RS12050 (N5937_12050) - 2390200..2390616 (-) 417 WP_103177855.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  N5937_RS12055 (N5937_12055) aphA 2390731..2391441 (-) 711 WP_263951633.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18778.79 Da        Isoelectric Point: 5.2456

>NTDB_id=738833 N5937_RS12035 WP_103177858.1 2386239..2386766(-) (ssb) [Leclercia adecarboxylata strain 2022CK-00320]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQQGGWGQPQQPQGGNQFSGGAQSRPQQPSAPA
QSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=738833 N5937_RS12035 WP_103177858.1 2386239..2386766(-) (ssb) [Leclercia adecarboxylata strain 2022CK-00320]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGTGCAGTGGCCAACATTACGCTGGCTACCTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTCGTGCTGTTTGGCAAACTGGCCGAGGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCTGGCCAGGAAAAATACACCACTGAAGTGGTGGTGAACGTTGG
CGGTACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCGCCAGCAGGCGGCGGCCAGCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCACAGTCCCGTCCGCAGCAGCCATCTGCGCCAGCG
CAGTCCAACGAACCGCCAATGGACTTCGATGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

77.222

100

0.794
  ssb Glaesserella parasuis strain SC1401

57.065

100

0.6
  ssb Neisseria meningitidis MC58

46.629

100

0.474
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.474
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.371