Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACRAD_RS13430 Genome accession   NZ_AP019740
Coordinates   2838881..2839465 (-) Length   194 a.a.
NCBI ID   WP_005024120.1    Uniprot ID   -
Organism   Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2833881..2844465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACRAD_RS13410 (ACRAD_26160) - 2835495..2836142 (+) 648 WP_005024126.1 hypothetical protein -
  ACRAD_RS13415 (ACRAD_26170) - 2836357..2837289 (+) 933 WP_004812228.1 IS5-like element ISAha3 family transposase -
  ACRAD_RS13420 (ACRAD_26180) - 2837467..2837793 (+) 327 WP_005024124.1 hypothetical protein -
  ACRAD_RS13425 (ACRAD_26190) - 2837869..2838735 (+) 867 WP_005024122.1 SDR family oxidoreductase -
  ACRAD_RS13430 (ACRAD_26200) ssb 2838881..2839465 (-) 585 WP_005024120.1 single-stranded DNA-binding protein Machinery gene
  ACRAD_RS13435 (ACRAD_26210) - 2839517..2840881 (-) 1365 WP_005024118.1 MFS transporter -
  ACRAD_RS13445 (ACRAD_26230) - 2841030..2842112 (-) 1083 WP_005024117.1 DUF475 domain-containing protein -
  ACRAD_RS13450 (ACRAD_26240) tenA 2842353..2843027 (+) 675 WP_005017903.1 thiaminase II -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21070.77 Da        Isoelectric Point: 6.4820

>NTDB_id=73765 ACRAD_RS13430 WP_005024120.1 2838881..2839465(-) (ssb) [Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSGRQQGDQAGAGFGGDQGYGQPRFNNNQGSQGGYGNGNQQGGGFNNNNNQG
GGYGNNNPGGFAPKAPQSAPASQVPADLDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=73765 ACRAD_RS13430 WP_005024120.1 2838881..2839465(-) (ssb) [Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413]
ATGCGTGGTGTAAATAAGGTTATTTTAGTAGGGACTTTAGGGCGCGATCCAGAGACAAAAACTTTCCCAAATGGCGGCTC
TTTAACACAGTTTTCTATCGCAACGAGTGAATCGTGGACAGATAAAAGCACAGGTGAACGTAAAGAACAGACAGAATGGC
ACCGTATTGTGCTACACAACCGTCTAGGTGAAATTGCCCAGCAATATTTACGTAAAGGTTCAAAAGTTTATATTGAAGGT
TCATTGCGTACCCGTCAATGGACCGACCAGAACGGTCAGGAACGTTATACTACCGAGATTCGTGGTGAACAGATGCAGAT
GCTAGACTCAGGCCGACAGCAGGGCGATCAGGCAGGTGCAGGTTTTGGTGGTGATCAAGGCTATGGTCAACCACGTTTCA
ATAATAATCAGGGTAGCCAGGGCGGTTATGGTAATGGCAACCAGCAGGGTGGCGGTTTTAATAATAACAACAACCAAGGT
GGCGGTTATGGCAATAATAACCCGGGCGGTTTCGCACCTAAAGCTCCTCAGTCAGCTCCAGCCTCTCAAGTTCCGGCTGA
CCTGGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

54.271

100

0.557
  ssb Vibrio cholerae strain A1552

42.647

100

0.448
  ssb Neisseria gonorrhoeae MS11

41

100

0.423
  ssb Neisseria meningitidis MC58

40.5

100

0.418

Multiple sequence alignment