Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QA712_RS11945 Genome accession   NZ_CP121539
Coordinates   2272305..2273972 (+) Length   555 a.a.
NCBI ID   WP_259746426.1    Uniprot ID   -
Organism   Lactococcus lactis strain MA5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2267305..2278972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA712_RS11920 (QA712_11915) - 2268345..2268584 (+) 240 WP_003131346.1 exodeoxyribonuclease VII small subunit -
  QA712_RS11925 (QA712_11920) - 2268734..2269891 (+) 1158 WP_259746430.1 glycerate kinase -
  QA712_RS11930 (QA712_11925) - 2269973..2270830 (+) 858 WP_047206461.1 polyprenyl synthetase family protein -
  QA712_RS11935 (QA712_11930) - 2270909..2271715 (+) 807 WP_311928933.1 TlyA family RNA methyltransferase -
  QA712_RS11940 (QA712_11935) - 2271712..2272158 (+) 447 WP_372757288.1 arginine repressor -
  QA712_RS11945 (QA712_11940) recN 2272305..2273972 (+) 1668 WP_259746426.1 DNA repair protein RecN Machinery gene
  QA712_RS11950 (QA712_11945) - 2274698..2275264 (+) 567 WP_311928931.1 TMEM175 family protein -
  QA712_RS11955 (QA712_11950) - 2275362..2275883 (+) 522 WP_047206455.1 DUF805 domain-containing protein -
  QA712_RS11960 (QA712_11955) - 2275907..2276845 (+) 939 WP_047206454.1 DUF805 domain-containing protein -
  QA712_RS11965 (QA712_11960) rsmH 2277122..2278018 (+) 897 WP_003131356.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  QA712_RS11970 (QA712_11965) - 2278176..2278556 (+) 381 WP_003131357.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62840.99 Da        Isoelectric Point: 4.5974

>NTDB_id=737348 QA712_RS11945 WP_259746426.1 2272305..2273972(+) (recN) [Lactococcus lactis strain MA5]
MLQEISIKNFAIIEEIHLSFESGMTILTGETGAGKSIIIDAMSLLLGGRASSDFVRHGANKAEIEGLFFFDKTPELKSVL
LELGFEEVDSEIILRREIFANGRSVCRINGQMVNLATLRQVGELLVDIHGQHDSQELMNPKSHLRLLDEFGDEDFDQIKN
NYKLKFENFKNLRQQLNLRQKNEQEFAQRIEILQFQAEEIEAAEINLEEDEQLVNRREKLNNIKNIADSLSSAYLALDDE
DNDYSSLNNIRTTMTELDKISNFDNDYQELADKTAESYYVLEEVANQIQRIMSDLEFNPAELLQIEDRIMTLTTLKKKYG
PELSDVMNYLEKVQLELSELTGSENDSENLENSVKVAQVQLIEASKKLNEARHKIAIEVEKDIKHELSELYMEKADFKVS
FEGAKFSANGNEHVEFFIQTNPGEGFKPLAKTASGGELSRLMLAIKSSFSRRENKTAIVFDEVDTGVSGRVAQAIANKIY
KIARHGQVLAISHLPQVVAIADRQFYIEKASTDDITTSTVRKLNAEERVNEIAKMLAGEDLTKEALAQAKRLLSK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=737348 QA712_RS11945 WP_259746426.1 2272305..2273972(+) (recN) [Lactococcus lactis strain MA5]
ATGCTACAAGAGATTTCAATCAAAAATTTTGCAATTATCGAAGAAATTCATCTATCCTTTGAGAGTGGAATGACGATTTT
AACTGGGGAAACTGGTGCGGGAAAATCAATAATTATTGATGCAATGTCTTTATTACTAGGTGGGCGTGCTTCGAGTGATT
TTGTGCGGCATGGGGCAAACAAAGCCGAAATAGAAGGTCTCTTTTTCTTTGATAAAACTCCAGAATTGAAGTCGGTATTA
TTAGAACTCGGCTTTGAAGAAGTAGATTCTGAAATTATTTTAAGACGTGAGATTTTTGCTAATGGTCGTTCCGTTTGTCG
AATCAATGGTCAAATGGTTAATTTAGCTACGCTAAGACAAGTGGGTGAATTATTAGTTGATATTCATGGTCAACACGATA
GCCAAGAATTGATGAATCCGAAAAGCCATCTTCGTTTACTTGATGAATTTGGTGACGAAGACTTTGATCAGATAAAAAAT
AATTACAAACTCAAATTTGAAAACTTCAAAAATTTGCGTCAACAGCTCAATTTACGACAAAAAAATGAGCAAGAATTTGC
TCAAAGAATTGAAATTCTTCAATTTCAGGCTGAAGAAATTGAAGCGGCGGAAATTAATCTTGAAGAAGATGAACAATTAG
TTAATCGCCGAGAAAAGTTAAATAATATTAAAAATATTGCTGATTCGCTTAGTAGTGCTTATCTAGCGCTTGATGATGAA
GATAATGATTATTCAAGTCTTAATAATATCCGAACAACAATGACAGAATTGGATAAAATTAGTAACTTTGATAATGACTA
CCAAGAGCTTGCTGACAAGACCGCTGAAAGTTATTATGTATTAGAAGAAGTTGCTAATCAAATTCAAAGAATCATGAGTG
ATTTAGAATTTAATCCAGCTGAACTTTTACAAATTGAAGACCGGATTATGACCTTGACCACTTTGAAGAAAAAATACGGC
CCAGAATTGTCTGATGTGATGAACTATTTAGAGAAAGTCCAACTTGAACTCTCAGAATTGACGGGTTCAGAAAATGACTC
AGAAAATCTAGAAAATTCAGTTAAAGTTGCACAAGTTCAACTCATTGAAGCAAGTAAAAAACTCAATGAAGCGCGCCATA
AAATTGCCATAGAAGTTGAAAAAGATATTAAACACGAACTTTCTGAGCTTTATATGGAAAAAGCTGATTTCAAAGTTAGT
TTTGAAGGTGCAAAGTTTTCGGCAAACGGGAATGAACATGTTGAATTCTTTATTCAAACCAATCCAGGAGAAGGATTTAA
ACCACTGGCCAAAACAGCTTCGGGTGGTGAACTTTCACGTTTAATGCTAGCCATAAAATCAAGCTTTTCAAGACGCGAAA
ATAAAACAGCCATTGTTTTTGATGAGGTCGATACTGGTGTTTCTGGTCGTGTTGCTCAGGCGATTGCTAATAAAATATAT
AAAATTGCTAGGCATGGGCAAGTTCTTGCAATTTCTCACCTTCCACAAGTTGTGGCTATTGCCGACAGACAATTTTATAT
TGAAAAAGCTTCAACTGATGACATTACTACTTCCACAGTTAGAAAATTAAACGCTGAAGAAAGAGTAAATGAAATTGCGA
AAATGCTTGCTGGTGAAGATTTAACTAAAGAAGCCTTAGCTCAGGCTAAACGTTTATTGAGCAAATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_23)

(4-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.007

100

0.443