Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OCT51_RS20980 Genome accession   NZ_CP107009
Coordinates   4507286..4508791 (-) Length   501 a.a.
NCBI ID   WP_263581718.1    Uniprot ID   -
Organism   Halomonas sp. LR3S48     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4502286..4513791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCT51_RS20965 (OCT51_20965) - 4504612..4505595 (+) 984 WP_263581715.1 alpha/beta hydrolase -
  OCT51_RS20970 (OCT51_20970) - 4505589..4506083 (+) 495 WP_263581716.1 hypothetical protein -
  OCT51_RS20975 (OCT51_20975) - 4506097..4507152 (-) 1056 WP_263581717.1 sodium:calcium antiporter -
  OCT51_RS20980 (OCT51_20980) comM 4507286..4508791 (-) 1506 WP_263581718.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OCT51_RS20985 (OCT51_20985) - 4508867..4509196 (-) 330 WP_263581719.1 accessory factor UbiK family protein -
  OCT51_RS20990 (OCT51_20990) - 4509488..4509826 (+) 339 WP_163559241.1 P-II family nitrogen regulator -
  OCT51_RS20995 (OCT51_20995) - 4509865..4511187 (+) 1323 WP_263581720.1 ammonium transporter -
  OCT51_RS21000 (OCT51_21000) glnK 4511324..4511662 (+) 339 WP_086509163.1 P-II family nitrogen regulator -
  OCT51_RS21005 (OCT51_21005) - 4511777..4512553 (-) 777 WP_263581721.1 ferredoxin--NADP reductase -
  OCT51_RS21010 (OCT51_21010) - 4512700..4513626 (+) 927 WP_263581722.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 54021.21 Da        Isoelectric Point: 7.3845

>NTDB_id=737348 OCT51_RS20980 WP_263581718.1 4507286..4508791(-) (comM) [Halomonas sp. LR3S48]
MLAIVATRAGLGLEAPEVQVEVHLANGLPGMTLVGLPEAAVKESRERVRSALTNAGFDFPNTRRIVLNLAPADLPKVGGR
FDLPIALGILIASGQLPGEALEEIESVGELALDGRLRPISGVLPLALAARRAGRKLIVPKENADEAALAGDLQVLPAEHL
LDVMAHLQGQKPIAAHRLEAPPIVDSREGDLAEVRGQHQARRALEIAAAGSHNLLFAGPPGTGKTMLASRLPGILPELTE
EEALEVAAIRSVCGLPLAEQWGRRPFRAPHHTASAVALVGGGSWPRPGEISLAHHGVLFLDELPEFSRHVLEVMREPMES
GRIHIARANHERKFPARFQLVAAMNPCPCGHLGDPRQACQCTAAQIQRYQSRLSGPLLDRIDLQIEVPALPPEQLTSREV
GESSAEVRARVVAARERQYARGALNAHLGGRELEAACALSTSDRAWLAGVLERLRLSARAYHRVLRVALTLADLAAKPYP
ERGELMEAIGYRQLDRQLRQG

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=737348 OCT51_RS20980 WP_263581718.1 4507286..4508791(-) (comM) [Halomonas sp. LR3S48]
ATGCTGGCGATCGTTGCCACACGGGCCGGCCTGGGGCTGGAAGCGCCCGAGGTACAGGTCGAGGTACACCTGGCCAATGG
CCTGCCGGGGATGACCCTGGTCGGCCTGCCCGAGGCCGCCGTCAAGGAGAGCCGCGAGCGGGTGCGCAGCGCCCTCACCA
ACGCCGGCTTCGATTTCCCCAATACCCGTCGAATCGTGCTCAACCTGGCGCCCGCCGACCTGCCCAAGGTTGGCGGGCGC
TTCGATCTGCCCATTGCGCTGGGCATCCTGATCGCCTCGGGTCAGCTTCCCGGCGAGGCGCTTGAGGAGATCGAGAGCGT
CGGCGAGCTGGCGCTGGACGGCCGCCTGCGCCCCATCAGCGGGGTCTTGCCGCTGGCACTCGCCGCACGCCGGGCGGGGC
GCAAGCTGATCGTGCCCAAGGAGAATGCCGACGAGGCGGCGCTGGCCGGTGACCTTCAGGTACTGCCGGCCGAGCACCTG
CTCGACGTCATGGCGCACCTGCAGGGGCAGAAGCCGATCGCCGCGCACCGCCTCGAGGCGCCACCCATCGTCGACTCCCG
CGAGGGCGACCTGGCCGAGGTGCGTGGCCAGCACCAGGCCCGCCGCGCGCTGGAGATTGCCGCGGCCGGCTCGCACAACC
TGCTTTTCGCCGGGCCACCCGGTACCGGCAAGACCATGCTGGCGAGCCGCCTGCCGGGCATCCTGCCGGAACTCACCGAG
GAGGAGGCGCTGGAGGTGGCCGCCATTCGTTCGGTGTGCGGCCTGCCGCTGGCCGAGCAGTGGGGGCGTCGGCCCTTTCG
TGCGCCGCACCACACCGCCAGCGCCGTGGCCCTGGTCGGCGGCGGCTCCTGGCCGCGGCCGGGCGAGATCTCGCTGGCCC
ACCACGGTGTGCTGTTCCTCGACGAACTGCCCGAGTTCAGCCGCCACGTGCTCGAGGTGATGCGCGAGCCGATGGAGTCG
GGCCGCATCCATATCGCCCGGGCCAATCACGAGCGTAAATTCCCCGCGCGCTTCCAACTCGTAGCGGCCATGAACCCCTG
CCCCTGCGGCCACCTGGGCGACCCGCGCCAGGCCTGCCAGTGCACCGCGGCGCAGATCCAGCGCTACCAGTCGCGGCTCT
CGGGGCCGCTGCTCGACCGCATCGACCTGCAGATCGAAGTGCCGGCACTGCCACCGGAGCAGCTCACGTCGCGCGAGGTA
GGCGAGAGTTCGGCCGAGGTACGCGCCCGGGTCGTGGCCGCTCGCGAGCGCCAGTACGCCCGTGGCGCGCTCAACGCCCA
CCTCGGCGGGCGCGAGCTGGAAGCCGCCTGCGCCCTGTCGACGTCGGACCGCGCCTGGCTGGCTGGCGTGCTCGAGCGTC
TGCGCCTCTCGGCGCGCGCCTACCACCGCGTGCTGCGGGTGGCGCTGACACTGGCCGACCTCGCCGCCAAGCCGTATCCG
GAGCGCGGCGAGCTGATGGAGGCGATCGGCTACCGCCAGCTCGATCGTCAACTGCGCCAGGGTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.754

100

0.561
  comM Vibrio campbellii strain DS40M4

55.777

100

0.559
  comM Haemophilus influenzae Rd KW20

54.348

100

0.549
  comM Glaesserella parasuis strain SC1401

53.831

100

0.547
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.389

100

0.489
  comM Legionella pneumophila str. Paris

49.395

99.002

0.489
  comM Legionella pneumophila strain ERS1305867

49.395

99.002

0.489