Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OCT48_RS00425 Genome accession   NZ_CP107008
Coordinates   90612..92117 (+) Length   501 a.a.
NCBI ID   WP_263590846.1    Uniprot ID   -
Organism   Halomonas sp. M4R1S46     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 85612..97117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCT48_RS00400 (OCT48_00400) - 86320..87534 (+) 1215 WP_263590842.1 porin -
  OCT48_RS00405 (OCT48_00405) glnK 87726..88064 (-) 339 WP_183383023.1 P-II family nitrogen regulator -
  OCT48_RS00410 (OCT48_00410) - 88208..89527 (-) 1320 WP_263590843.1 ammonium transporter -
  OCT48_RS00415 (OCT48_00415) - 89565..89903 (-) 339 WP_263590844.1 P-II family nitrogen regulator -
  OCT48_RS00420 (OCT48_00420) - 90200..90547 (+) 348 WP_263590845.1 accessory factor UbiK family protein -
  OCT48_RS00425 (OCT48_00425) comM 90612..92117 (+) 1506 WP_263590846.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OCT48_RS00430 (OCT48_00430) - 92134..92619 (-) 486 WP_263590847.1 hypothetical protein -
  OCT48_RS00435 (OCT48_00435) - 92616..93608 (-) 993 WP_263590848.1 alpha/beta hydrolase -
  OCT48_RS00440 (OCT48_00440) - 93848..96034 (+) 2187 WP_263590849.1 malate synthase G -
  OCT48_RS00445 (OCT48_00445) - 96250..96663 (+) 414 WP_183383015.1 PaaI family thioesterase -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 53298.62 Da        Isoelectric Point: 7.9548

>NTDB_id=737311 OCT48_RS00425 WP_263590846.1 90612..92117(+) (comM) [Halomonas sp. M4R1S46]
MTLAIIRTRAGLGLEAPEVLVEVHLANGLPGITLVGLPEAAVKESRERVRSALVNAGFDFPLRRITLNLAPADLPKDGGR
FDLPIALGLLVASGQVPAEALEATECVGELALDGVLRPVTGVLPLALATRRAGRRLIVPVANADEAALAGELEVLPAAHL
LEVVAHLLGQTPIPAHRLGRPAVSEAPGADLCEVRGQHQARRALEVAAAGGHNLLFAGPPGTGKTMLASRLPGILPPLGE
DEALEVAAVRSVTGLPLREQWGRRPFRAPHHTASAVALVGGGSRPRPGEISLAHHGVLFLDELPEFSRQVLEVMREPMES
GRIHIARANHERCYPARFQLVAAMNPCPCGHLGDPRQACRCTAAQIQRYQARLSGPLLDRIDLQVEVPALPPEQLTSREP
GEGSATVRARVLAARERQLARGALNAHLAGGELERACALDPGDRAWLAGVLERLRLSARAYHRVLRVALTLADLAGLPHP
GREQLIEAIGYRQLDRLLSGG

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=737311 OCT48_RS00425 WP_263590846.1 90612..92117(+) (comM) [Halomonas sp. M4R1S46]
ATGACGCTGGCAATCATTCGCACCCGGGCCGGCCTCGGCCTCGAGGCCCCCGAGGTCCTGGTGGAGGTGCACCTGGCCAA
CGGCCTGCCCGGCATCACCCTGGTCGGGCTGCCGGAGGCCGCGGTCAAGGAGAGCCGCGAGCGGGTGCGCAGTGCCCTGG
TCAATGCCGGCTTCGACTTCCCCCTGCGACGCATCACCCTCAACCTGGCACCCGCCGACCTGCCCAAGGACGGCGGGCGC
TTCGACCTGCCCATCGCCCTGGGCCTGCTGGTGGCCTCCGGCCAGGTGCCCGCCGAGGCCCTCGAGGCCACCGAGTGTGT
GGGCGAGCTGGCCCTGGACGGGGTCCTGCGGCCGGTGACCGGCGTGCTGCCCCTGGCCCTGGCGACACGGCGCGCCGGGC
GCCGGCTGATCGTGCCCGTCGCCAACGCCGACGAGGCGGCGCTGGCCGGCGAGCTCGAGGTACTGCCCGCCGCCCACCTG
CTCGAGGTGGTGGCCCACCTGCTGGGCCAGACGCCCATCCCTGCCCACCGGCTGGGGCGGCCAGCGGTCAGCGAGGCGCC
GGGGGCCGACCTGTGCGAGGTGCGCGGCCAGCACCAGGCGCGGCGGGCGCTGGAGGTGGCGGCGGCCGGGGGGCACAACC
TGCTGTTCGCCGGCCCGCCCGGCACCGGCAAGACCATGCTGGCCAGCCGGCTGCCGGGCATCCTGCCGCCGCTCGGCGAG
GACGAGGCCCTCGAGGTGGCGGCGGTGCGCTCGGTGACCGGCCTGCCGCTGCGCGAGCAGTGGGGTCGCCGGCCCTTCCG
CGCGCCGCACCACACCGCCAGCGCGGTGGCCCTGGTCGGCGGCGGCTCGCGACCGCGGCCCGGGGAGATCTCCCTGGCCC
ACCACGGGGTGCTGTTCCTCGACGAGCTGCCGGAGTTCTCCCGCCAGGTGCTGGAGGTGATGCGCGAGCCCATGGAGTCC
GGACGGATCCACATCGCCCGGGCCAATCACGAGCGCTGCTACCCGGCACGCTTCCAACTGGTGGCGGCGATGAATCCCTG
CCCCTGCGGCCACCTGGGGGATCCCCGCCAGGCCTGCCGGTGCACCGCGGCCCAGATCCAGCGCTATCAGGCGCGCCTGT
CGGGACCGCTGCTGGATCGCATCGACCTGCAGGTGGAGGTGCCGGCATTGCCGCCCGAGCAGCTGACCTCCCGGGAGCCC
GGGGAGGGCTCGGCGACGGTACGGGCCCGGGTGCTGGCGGCCCGCGAGCGCCAGCTGGCCCGGGGCGCGCTCAATGCCCA
TCTGGCGGGGGGCGAGCTGGAGCGCGCCTGCGCCCTCGACCCCGGCGACCGGGCCTGGCTGGCCGGCGTGCTGGAGCGGC
TCAGGCTCTCGGCCCGAGCCTACCACCGGGTGCTGCGGGTGGCCCTGACCCTGGCCGACCTGGCCGGGCTGCCGCACCCC
GGCCGCGAGCAGTTGATCGAGGCCATCGGCTATCGCCAGCTGGATCGGCTGCTCAGCGGCGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.175

100

0.563
  comM Vibrio cholerae strain A1552

55.268

100

0.555
  comM Haemophilus influenzae Rd KW20

54.257

100

0.547
  comM Glaesserella parasuis strain SC1401

53.861

100

0.543
  comM Legionella pneumophila str. Paris

49.698

99.202

0.493
  comM Legionella pneumophila strain ERS1305867

49.698

99.202

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.39

99.401

0.471