Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACRAD_RS00870 Genome accession   NZ_AP019740
Coordinates   186443..187927 (-) Length   494 a.a.
NCBI ID   WP_005022934.1    Uniprot ID   -
Organism   Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 181443..192927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACRAD_RS00845 (ACRAD_01580) - 182150..182530 (-) 381 WP_005022921.1 membrane protein -
  ACRAD_RS00850 (ACRAD_01590) - 182639..183037 (+) 399 WP_005022923.1 MAPEG family protein -
  ACRAD_RS00855 (ACRAD_01600) ppa 183156..183692 (+) 537 WP_005022926.1 inorganic diphosphatase -
  ACRAD_RS00860 (ACRAD_01610) - 183790..185058 (-) 1269 WP_005022928.1 OprD family outer membrane porin -
  ACRAD_RS00865 (ACRAD_01620) - 185621..186388 (+) 768 WP_005022931.1 TorF family putative porin -
  ACRAD_RS00870 (ACRAD_01630) comM 186443..187927 (-) 1485 WP_005022934.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACRAD_RS00875 (ACRAD_01640) - 187991..188218 (-) 228 WP_005017183.1 accessory factor UbiK family protein -
  ACRAD_RS00880 (ACRAD_01650) glnK 188488..188826 (+) 339 WP_005017180.1 P-II family nitrogen regulator -
  ACRAD_RS00885 (ACRAD_01660) - 188885..190267 (+) 1383 WP_005017177.1 ammonium transporter -
  ACRAD_RS00890 (ACRAD_01670) nrdR 190389..190841 (+) 453 WP_005017176.1 transcriptional regulator NrdR -
  ACRAD_RS00895 (ACRAD_01680) ribD 190893..191948 (+) 1056 WP_051005726.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 54250.62 Da        Isoelectric Point: 9.1773

>NTDB_id=73729 ACRAD_RS00870 WP_005022934.1 186443..187927(-) (comM) [Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413]
MSFAKIYTRGVLGLHAPSIEVEVHVSQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILVASGQLPEQSTEQIEFIGELALDGCLRPVSGTLAIAMACQKVRHQLILAEANAMEAAQLPDFQVYGAQHL
KQVCQHLLQQQPLLPVKRKLSKAAQDYKLDLADIKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPPNA
QENLEVASIYSIANVQHPFGQRPFRAPHHTASAIALVGGGSQPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQMTFPANFQLVAAMNPCPCGYAFNQDNRCQCSADAIKRYQNRISGPLLDRIDLHIDVPPLQAHELQQTTPAE
NSDTVRKRVILAYEQQLQRQGCLNQLLSPKQLQLHAQLDQSSLRIIEMAQQRLNLSARAYHRVLRVARTIADLALSKEIQ
TSHLSEALSYRSQS

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=73729 ACRAD_RS00870 WP_005022934.1 186443..187927(-) (comM) [Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413]
ATGTCTTTTGCCAAAATTTACACCCGGGGGGTGCTGGGGCTACATGCGCCTTCTATTGAAGTTGAAGTTCATGTGAGTCA
GGGGCTTCCCTCCCTGACTATTGTAGGCCTTCCTGAAGCTGCGGTACGTGAAAGTAAAGATCGGGTTCGCTCGGCGATCA
TTAATAGTGGTTTTCAGTTTCCCACCAAACGCCTTACTATTAACTTGGCTCCTGCCGATTTGCCCAAAGATGGATCACGT
CTAGATCTACCGATTGCCTTGGGAATCTTGGTTGCTTCAGGCCAGCTCCCTGAACAAAGTACAGAACAGATTGAATTTAT
TGGTGAACTGGCTCTAGATGGCTGCTTGCGTCCGGTAAGCGGCACACTGGCAATTGCCATGGCATGTCAAAAAGTACGGC
ATCAGCTGATACTGGCAGAAGCAAATGCAATGGAAGCAGCGCAGCTCCCTGACTTTCAGGTCTACGGAGCACAGCACCTA
AAACAGGTTTGCCAGCATTTACTACAGCAACAGCCATTATTACCGGTTAAAAGGAAACTATCTAAAGCTGCTCAAGATTA
TAAACTGGATTTGGCAGATATTAAGGGGCAACTGCGCCCACGGCGTGCTTTGGAAATTGCAGCAGCAGGCGGTCACTCTC
TACTTTTTAAGGGCCCTCCTGGAACTGGAAAGACCCTGCTGGCTTCAAGGTTACCCAGCATTTTACCTCCGCCCAATGCC
CAGGAAAATCTTGAAGTTGCCAGTATCTATTCAATTGCCAATGTTCAGCATCCCTTTGGACAACGGCCTTTTCGGGCTCC
ACACCATACTGCATCTGCTATTGCGCTGGTCGGCGGCGGCTCGCAACCCAAGCCTGGTGAAATCACTCTGGCACATTTAG
GTGTTTTATTTCTAGATGAGCTTCCTGAATTTGACCGCAAAGTACTGGAAGTTTTACGTCAGCCACTCGAGTCTAAAGAA
ATTGTTATTTCTCGGGCTTCCCGGCAAATGACTTTTCCGGCCAACTTCCAGTTGGTAGCAGCTATGAATCCTTGTCCATG
TGGTTATGCATTTAATCAGGATAACCGTTGCCAGTGTTCAGCCGATGCAATCAAGCGCTATCAGAACCGTATTTCCGGTC
CATTGCTGGACCGGATTGATCTGCATATTGATGTGCCACCCTTGCAGGCGCATGAACTCCAGCAAACCACACCTGCTGAG
AATTCAGACACAGTCAGGAAACGTGTCATCTTAGCTTATGAACAGCAGCTCCAACGCCAAGGTTGCCTTAACCAGCTGCT
TTCCCCTAAACAGCTCCAACTGCATGCACAGCTGGACCAAAGCTCACTACGTATAATTGAAATGGCACAGCAACGACTCA
ATCTCTCTGCCCGTGCTTATCATCGGGTTTTACGTGTAGCCAGAACAATTGCTGATCTGGCACTTTCCAAAGAAATCCAG
ACAAGTCATTTAAGTGAAGCGCTTTCTTACCGCAGTCAGTCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.8

100

0.524
  comM Glaesserella parasuis strain SC1401

50.797

100

0.516
  comM Vibrio campbellii strain DS40M4

51.411

100

0.516
  comM Vibrio cholerae strain A1552

51.21

100

0.514
  comM Legionella pneumophila str. Paris

50.202

100

0.504
  comM Legionella pneumophila strain ERS1305867

50.202

100

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.72

100

0.476

Multiple sequence alignment