Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NDS46_RS29510 Genome accession   NZ_CP106992
Coordinates   6531674..6532180 (-) Length   168 a.a.
NCBI ID   WP_087442693.1    Uniprot ID   -
Organism   Paenibacillus thiaminolyticus strain SY20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6526674..6537180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDS46_RS29490 (NDS46_29520) - 6528184..6529119 (-) 936 WP_272047507.1 DUF2232 domain-containing protein -
  NDS46_RS29495 (NDS46_29525) - 6529238..6529660 (-) 423 WP_119793797.1 CBS domain-containing protein -
  NDS46_RS29500 (NDS46_29530) - 6529779..6530756 (-) 978 WP_272047508.1 LCP family protein -
  NDS46_RS29505 (NDS46_29535) rpsR 6531378..6531653 (-) 276 WP_087442694.1 30S ribosomal protein S18 -
  NDS46_RS29510 (NDS46_29540) ssbA 6531674..6532180 (-) 507 WP_087442693.1 single-stranded DNA-binding protein Machinery gene
  NDS46_RS29515 (NDS46_29545) rpsF 6532228..6532515 (-) 288 WP_006678724.1 30S ribosomal protein S6 -
  NDS46_RS29520 (NDS46_29550) - 6532797..6532991 (+) 195 WP_006678725.1 YjzC family protein -
  NDS46_RS32210 - 6533487..6533600 (-) 114 WP_275100803.1 putative holin-like toxin -
  NDS46_RS29530 (NDS46_29560) - 6533988..6534191 (-) 204 WP_087442692.1 DUF951 domain-containing protein -
  NDS46_RS29535 (NDS46_29565) - 6534181..6535110 (-) 930 WP_272047509.1 mechanosensitive ion channel family protein -
  NDS46_RS29540 (NDS46_29570) - 6535115..6535390 (-) 276 WP_087442690.1 DUF3343 domain-containing protein -
  NDS46_RS29545 (NDS46_29575) yyaC 6535551..6536084 (+) 534 WP_272047510.1 spore protease YyaC -
  NDS46_RS29550 (NDS46_29580) - 6536081..6536608 (-) 528 WP_143797682.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18469.25 Da        Isoelectric Point: 4.8107

>NTDB_id=737017 NDS46_RS29510 WP_087442693.1 6531674..6532180(-) (ssbA) [Paenibacillus thiaminolyticus strain SY20]
MLNRVILIGRLTRDPELRYTPSGVAVTQFTLAVDRPFSNQSGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYDNNEGKRVYVTEVIADNVRFLESNRDSGGSRDDMGGGYGGGQPNNNSRPYGGGGSNQPQSQSRGPAADPFSDDGRPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=737017 NDS46_RS29510 WP_087442693.1 6531674..6532180(-) (ssbA) [Paenibacillus thiaminolyticus strain SY20]
ATGTTGAATCGCGTGATCTTGATTGGTCGTCTAACCCGTGACCCTGAATTGCGCTATACGCCATCCGGAGTTGCTGTGAC
GCAATTTACGCTGGCGGTCGATCGTCCGTTCTCGAACCAGAGCGGCGAGCGGGAGGCGGATTTCATTCCCGTGGTTACAT
GGCGGCAGTTGGCAGAGACTTGCGCCAATTACTTGCGTAAAGGTCGGCTGACGGCAGTGGAAGGGCGAATCCAAGTCCGC
AATTACGACAACAATGAAGGGAAGCGCGTATACGTTACGGAGGTTATCGCCGATAACGTACGATTCCTGGAGTCCAACCG
CGACAGCGGAGGAAGTCGTGATGATATGGGCGGAGGTTATGGCGGCGGACAGCCGAACAATAACTCGCGGCCATATGGCG
GAGGAGGCTCTAACCAGCCCCAGTCCCAGTCCCGCGGTCCGGCAGCTGATCCATTCTCTGACGACGGCAGACCGATCGAT
ATATCTGATGATGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.814

100

0.571
  ssb Latilactobacillus sakei subsp. sakei 23K

51.429

100

0.536
  ssb Neisseria gonorrhoeae MS11

36.571

100

0.381
  ssb Glaesserella parasuis strain SC1401

33.871

100

0.375
  ssb Neisseria meningitidis MC58

36

100

0.375