NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	OC371_RS18300	Genome accession	NZ_CP106988
Coordinates	3761398..3762885 (+)	Length	495 a.a.
NCBI ID	WP_000010466.1	Uniprot ID	-
Organism	Acinetobacter baumannii strain NY13623
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 3756398..3767885

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OC371_RS18275 (OC371_18275)	ribD	3757315..3758400 (-)	1086	WP_001292506.1	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	-
OC371_RS18280 (OC371_18280)	nrdR	3758416..3758874 (-)	459	WP_000543541.1	transcriptional regulator NrdR	-
OC371_RS18285 (OC371_18285)	-	3759032..3760429 (-)	1398	WP_000738520.1	ammonium transporter	-
OC371_RS18290 (OC371_18290)	glnK	3760487..3760825 (-)	339	WP_000780326.1	P-II family nitrogen regulator	-
OC371_RS18295 (OC371_18295)	-	3761105..3761332 (+)	228	WP_000894500.1	accessory factor UbiK family protein	-
OC371_RS18300 (OC371_18300)	comM	3761398..3762885 (+)	1488	WP_000010466.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
OC371_RS18305 (OC371_18305)	-	3762882..3764334 (-)	1453	Protein_3569	PLP-dependent aminotransferase family protein	-
OC371_RS18310 (OC371_18310)	-	3764446..3765222 (+)	777	WP_000845026.1	aldolase	-
OC371_RS18315 (OC371_18315)	-	3765237..3766115 (+)	879	WP_000772976.1	dihydrodipicolinate synthase family protein	-
OC371_RS18320 (OC371_18320)	-	3766158..3766970 (-)	813	WP_000975212.1	TorF family putative porin	-
OC371_RS19995	-	3767027..3767198 (-)	172	Protein_3573	hypothetical protein	-

Sequence

Protein

Download Length: 495 a.a. Molecular weight: 54490.30 Da Isoelectric Point: 7.1258

                                >NTDB_id=736980 OC371_RS18300 WP_000010466.1 3761398..3762885(+) (comM) [Acinetobacter baumannii strain NY13623]

MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR

LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDISHLPNLECYPVNHL

KEVCEHFLGTQKLAHAQPSDHSNEMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST

QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE

IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE

DSNSVRQRVISAYEQQMQRQDCLNQALSPKQLEQYAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEVIQ

SPHLTEALSYRGNHS

Nucleotide

Download Length: 1488 bp

                                >NTDB_id=736980 OC371_RS18300 WP_000010466.1 3761398..3762885(+) (comM) [Acinetobacter baumannii strain NY13623]

ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGATTACATGCGCCTCTCATTGAGGTTGAGGTGCATGTGAGTCA

AGGCTTACCCTCTCTGACTATTGTAGGCTTAGCGGAAGCAGCAGTTAGGGAAAGTAAGGATAGGGTTCGCTCAGCTATTA

TTAACAGTGGATTTCAATTTCCAACTAAGCGGCTGACCATTAACCTTGCTCCTGCAGATTTGCCCAAAGATGGTTCACGG

CTAGATTTACCAATTGCTTTAGGCATCTTAATTGCCTCTGGTCAACTTCCGGAAAACTGCACAGAAGACTTTGAATTTAT

TGGAGAGTTGGCTCTAGACGGTCATGTAAGACCTGTGTCAGGCGCCTTAACTTTAGCAATGGCATGCCAGCAAGCTCAGC

ATAAAATCGTTTTACCAGTCGATAATAGCCAAGATATTAGCCATTTACCTAATCTTGAGTGTTATCCGGTTAATCATTTA

AAAGAGGTGTGCGAGCACTTTTTAGGCACACAAAAGCTAGCTCACGCACAGCCAAGTGACCATTCAAATGAAATGCCCTA

TAAATTTGATCTTGCAGATGTTAAAGGTCAGCTACGCCCACGGCGTGCACTAGAAATTGCTGCCGCTGGGGGCCATTCCC

TGCTCTTTAAAGGACCACCAGGCACAGGTAAAACTTTATTGGCCTCACGCCTGCCTTCCATTTTACCGCCACTTTCTACT

CAAGAAACTCTTGAAGTTGCAAGTATTTATTCTATTTCAAATACACCACATACTTTTGGGCAGCGTCCATTTCGCGCGCC

CCACCATACAGCATCAGCAATTGCACTGGTTGGGGGCGGTTCACACCCTAAACCGGGTGAAATTACTTTATCTCATTTAG

GTGTTCTATTTTTAGATGAACTTCCCGAGTTTGACAGAAAGGTTCTAGAAGTCTTACGCCAACCGCTTGAGTCAAAAGAA

ATCATTATTTCACGTGCGGCTCGGCAAATTACTTATCCGGCGAACTTTCAGCTCATTGCAGCAATGAATCCTTGTCCATG

TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGTTCTCCAGAAAGCATTAAGCGCTATCAAAACCGCATATCGGGGC

CGTTACTCGACCGCATCGATTTACATATTGATGTACCGCCTTTAAAAGCTCAGGAACTGCAAGATCCAACACCTGCTGAA

GACTCCAATAGTGTTCGACAACGTGTGATTTCTGCTTATGAGCAACAAATGCAAAGACAGGATTGTTTGAATCAGGCGCT

CTCGCCCAAACAACTGGAACAATATGCCGTTCTCGATAGTACTTCACAGCGAATGATTGAAATGGCTCAGCAACGTTTAA

ATTTATCTGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACTATTGCTGATTTGGCCCAAAGTGAGGTCATTCAA

AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGTAATCACTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Vibrio cholerae strain A1552	51.21	100	0.513
comM	Glaesserella parasuis strain SC1401	50.1	100	0.505
comM	Legionella pneumophila strain ERS1305867	49.197	100	0.495
comM	Legionella pneumophila str. Paris	49.197	100	0.495
comM	Haemophilus influenzae Rd KW20	49.098	100	0.495
comM	Vibrio campbellii strain DS40M4	48.485	100	0.485
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.6	100	0.471

Detailed information NTG0736980