Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   N7L95_RS16965 Genome accession   NZ_CP106951
Coordinates   3831021..3832562 (-) Length   513 a.a.
NCBI ID   WP_301256441.1    Uniprot ID   -
Organism   Eleftheria terrae strain P9846-PB     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3826021..3837562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7L95_RS16940 (N7L95_16975) - 3826409..3827005 (-) 597 WP_301256437.1 ATP-dependent Clp protease proteolytic subunit -
  N7L95_RS16945 (N7L95_16980) - 3827095..3827949 (+) 855 WP_301256438.1 sigma-70 family RNA polymerase sigma factor -
  N7L95_RS16950 (N7L95_16985) - 3828170..3828637 (-) 468 WP_301256439.1 hypothetical protein -
  N7L95_RS16955 (N7L95_16990) - 3828659..3829183 (-) 525 WP_301256440.1 hypothetical protein -
  N7L95_RS16960 (N7L95_16995) - 3829474..3830616 (-) 1143 WP_301260171.1 serine hydrolase domain-containing protein -
  N7L95_RS16965 (N7L95_17000) comM 3831021..3832562 (-) 1542 WP_301256441.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  N7L95_RS16970 (N7L95_17005) - 3832994..3833332 (+) 339 WP_301256442.1 P-II family nitrogen regulator -
  N7L95_RS16975 (N7L95_17010) - 3833363..3834739 (+) 1377 WP_301260172.1 ammonium transporter -
  N7L95_RS16980 (N7L95_17015) gshA 3834914..3836209 (+) 1296 WP_301256443.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 513 a.a.        Molecular weight: 54049.05 Da        Isoelectric Point: 8.3056

>NTDB_id=736801 N7L95_RS16965 WP_301256441.1 3831021..3832562(-) (comM) [Eleftheria terrae strain P9846-PB]
MSLAVIRSRALAGLSAPEVTVEVHLANGLPSFTLVGLADTEVKEARERVRAALLNSGLAFPHNKRITVNLAPADLPKESG
RFDLPIALGILAASGQLDASRLAAHEFAGELSLAGDLRPVRGALAMCLALQRAGMPRAMVLPQDSAREAALVQQAEVWGA
RHLLDVVQAMLPHHGSDAGSDPESPGWQRVSEAPPPARPLYPDLRDVKGQALAKRALEIAAAGGHSLLLVGAPGTGKSML
AQRFAGLLPPLDTEAALESAAVLSLAGGFDPQRWRQRPFRAPHHSVSSAALVGGGSPPRPGEISLAHHGVLFLDELPELP
RPALEALREPLETGRIVISRAARQSEFPARFQLVAAMNPCPCGYLGSSLHACRCSPDAVARYAGKLSGPLLDRIDLQVEV
APLSAEALLAVPDGETSESVARRVAAALDRQQARQGHPNAGLTGPAIDTHCALEPAAADLLHTAAGRLGWSARSLHRVLK
VARTVADLQGHPRLGRTHLAEAMQLRRALQAQP

Nucleotide


Download         Length: 1542 bp        

>NTDB_id=736801 N7L95_RS16965 WP_301256441.1 3831021..3832562(-) (comM) [Eleftheria terrae strain P9846-PB]
ATGTCGCTTGCCGTCATACGCAGCCGTGCGCTGGCCGGGCTGTCGGCGCCCGAGGTCACGGTGGAAGTGCACCTGGCCAA
CGGGCTCCCCAGCTTCACCCTGGTGGGGCTGGCCGACACCGAGGTCAAGGAAGCCCGGGAACGGGTGCGGGCGGCCCTGC
TCAACAGCGGGCTGGCCTTCCCCCACAACAAGCGCATCACGGTCAACCTGGCACCGGCCGACCTGCCCAAGGAATCTGGC
CGCTTCGACCTGCCGATCGCCCTCGGCATCCTGGCCGCCAGCGGCCAGCTCGACGCCTCTCGCCTTGCCGCGCACGAGTT
TGCCGGCGAGCTGTCGCTTGCCGGTGACCTGCGACCGGTGCGTGGCGCGCTGGCCATGTGCCTGGCGCTGCAACGCGCCG
GCATGCCGCGTGCGATGGTGCTGCCGCAGGACAGCGCCCGCGAGGCAGCGCTGGTGCAACAGGCCGAGGTGTGGGGCGCC
CGGCACCTGCTGGACGTGGTGCAGGCCATGCTGCCCCACCACGGCAGCGACGCCGGGAGCGACCCGGAGTCGCCCGGTTG
GCAGCGCGTGTCGGAGGCGCCGCCTCCGGCCCGACCGCTGTATCCCGACCTGCGGGACGTGAAGGGTCAGGCACTCGCGA
AGCGGGCGCTGGAGATTGCCGCCGCCGGCGGCCACAGTTTGCTGCTGGTCGGCGCCCCGGGCACCGGCAAGTCGATGCTG
GCGCAACGCTTCGCCGGGCTGCTGCCGCCGCTGGACACCGAGGCGGCGCTGGAATCGGCCGCGGTGCTCAGCCTGGCTGG
CGGCTTCGATCCACAACGCTGGCGGCAGCGGCCGTTCCGCGCGCCGCACCACAGCGTCTCCTCGGCTGCGCTGGTGGGTG
GCGGCTCGCCGCCGCGGCCGGGCGAGATCTCGTTGGCCCACCATGGCGTGCTGTTCCTCGACGAATTGCCCGAGCTGCCA
CGCCCGGCCCTCGAAGCCCTGCGCGAACCGCTGGAGACCGGCCGCATCGTGATCTCGAGGGCGGCCCGGCAGTCGGAGTT
TCCGGCGCGCTTCCAGTTGGTGGCGGCCATGAACCCCTGCCCGTGTGGCTACCTGGGGTCCAGCCTGCATGCCTGCCGCT
GCAGCCCGGACGCGGTGGCCCGCTATGCGGGCAAGCTCAGCGGACCGCTGCTCGACCGGATCGACCTGCAAGTGGAGGTG
GCGCCGCTGTCGGCCGAGGCGCTGCTGGCCGTGCCGGATGGCGAGACGAGTGAGTCGGTCGCACGGCGGGTGGCTGCAGC
GCTCGACCGGCAGCAGGCCCGCCAGGGCCATCCGAATGCTGGGCTGACAGGGCCGGCCATCGACACGCACTGCGCACTGG
AGCCGGCCGCCGCCGACCTGCTGCACACGGCCGCCGGCCGGCTGGGCTGGTCGGCGCGCAGCCTGCACCGGGTGCTCAAG
GTGGCCCGCACGGTGGCCGACCTGCAGGGCCACCCTCGCCTTGGCCGGACGCACCTGGCTGAGGCGATGCAGCTGCGCCG
GGCCTTGCAAGCCCAGCCGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(203-406)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.961

99.415

0.517
  comM Vibrio cholerae strain A1552

51.772

99.025

0.513
  comM Vibrio campbellii strain DS40M4

51.575

99.025

0.511
  comM Glaesserella parasuis strain SC1401

50.98

99.415

0.507
  comM Legionella pneumophila str. Paris

48.928

100

0.489
  comM Legionella pneumophila strain ERS1305867

48.928

100

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.053

99.61

0.429