Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M9799_RS07785 Genome accession   NZ_CP106881
Coordinates   1717978..1719513 (+) Length   511 a.a.
NCBI ID   WP_231043004.1    Uniprot ID   -
Organism   Comamonas endophytica strain 5MLIR     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1712978..1724513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9799_RS07755 (M9799_07755) - 1713572..1714528 (+) 957 WP_231043010.1 tripartite tricarboxylate transporter substrate binding protein -
  M9799_RS07760 (M9799_07760) - 1714591..1715541 (+) 951 WP_231043009.1 SMP-30/gluconolactonase/LRE family protein -
  M9799_RS07765 (M9799_07765) - 1715684..1716112 (+) 429 WP_231043008.1 hypothetical protein -
  M9799_RS07770 (M9799_07770) - 1716209..1716415 (+) 207 WP_231043007.1 hypothetical protein -
  M9799_RS07775 (M9799_07775) - 1716412..1716813 (-) 402 WP_231043006.1 RidA family protein -
  M9799_RS07780 (M9799_07780) - 1716936..1717862 (+) 927 WP_231043005.1 LysR family transcriptional regulator -
  M9799_RS07785 (M9799_07785) comM 1717978..1719513 (+) 1536 WP_231043004.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  M9799_RS07790 (M9799_07790) - 1719719..1720480 (+) 762 WP_231043003.1 SDR family NAD(P)-dependent oxidoreductase -
  M9799_RS07795 (M9799_07795) - 1720541..1721503 (+) 963 WP_231043002.1 tripartite tricarboxylate transporter substrate binding protein -
  M9799_RS07800 (M9799_07800) - 1721500..1722786 (+) 1287 WP_231043001.1 CaiB/BaiF CoA-transferase family protein -
  M9799_RS07805 (M9799_07805) - 1722783..1723763 (+) 981 WP_231043000.1 NADPH:quinone oxidoreductase family protein -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 54375.27 Da        Isoelectric Point: 8.4279

>NTDB_id=736405 M9799_RS07785 WP_231043004.1 1717978..1719513(+) (comM) [Comamonas endophytica strain 5MLIR]
MSLALVQSRALLGLHAPQVTVEVHLANGLPCFTLVGLADVEVKEARERVRSALINAGLEFPGNKRITVNLAPADLPKDSG
RFDLPIAIGILAASGQIDAQRLAGWEFAGELSLSGELRPVRGALATSLALHQQREQVLQVLPPGSAEEAAWVPEAQVFCA
RHLLDVVQAFVPRHADDEDAASAGWQRMPCQPRETHAGNAEMAEVKGQAQAKRALEIAAAGAHSLLLIGPPGAGKSMLAQ
RFADLLPPMSVDEALQTAALASLSGRFDARRWAQRPTASPHHTASAVALVGGGSPPRPGEISLAHHGVLFLDEFPEFSRA
ALEALREPLETGRISIARAAQRAEFPARFQLVAAMNPCPCGFWGSALRRCRCTPDQVARYQGKLSGPLLDRIDLHVEVPA
LPAAQLLAAAPAETTAQIRARVAKAHAAALRRQGAPNQQLQGRAIDQHLRLASAASDFVQAAAARLGWSGRSLHRVLKVA
RTIADLADSAGIETPHVAEAVQYRRALLQAQ

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=736405 M9799_RS07785 WP_231043004.1 1717978..1719513(+) (comM) [Comamonas endophytica strain 5MLIR]
ATGAGCCTTGCCCTCGTTCAAAGCCGCGCCCTGCTCGGGCTGCATGCGCCGCAGGTCACGGTGGAGGTGCATCTGGCCAA
TGGCCTGCCCTGCTTCACGCTGGTGGGCTTGGCCGATGTCGAAGTCAAGGAAGCGCGCGAGCGCGTGCGCAGCGCGCTGA
TCAATGCCGGGCTCGAATTTCCCGGCAACAAGCGCATCACCGTCAATCTCGCGCCTGCCGACCTGCCCAAGGATTCGGGG
CGCTTCGATCTCCCCATTGCCATCGGCATCCTGGCCGCCAGCGGCCAGATCGACGCGCAGCGGCTTGCCGGCTGGGAGTT
CGCGGGCGAACTGTCGCTGTCGGGCGAGCTGCGGCCGGTGCGCGGCGCGCTGGCCACCAGCCTGGCGCTGCACCAGCAGC
GCGAGCAGGTGCTGCAGGTGCTGCCGCCGGGCAGCGCCGAGGAGGCGGCCTGGGTGCCCGAGGCGCAGGTGTTCTGCGCG
CGCCATCTGCTGGACGTGGTGCAGGCCTTTGTGCCGCGCCACGCGGACGACGAGGATGCGGCATCCGCCGGCTGGCAGCG
CATGCCTTGCCAGCCGCGCGAGACCCATGCAGGCAATGCCGAGATGGCCGAGGTCAAGGGCCAGGCGCAGGCCAAGCGCG
CGCTGGAGATCGCGGCGGCGGGCGCGCACAGCCTGCTGCTGATCGGCCCGCCGGGCGCGGGCAAGTCGATGCTGGCCCAG
CGCTTTGCCGACCTGCTGCCGCCGATGTCGGTCGACGAGGCGCTGCAGACCGCGGCGCTAGCCAGCCTCAGCGGGCGCTT
CGATGCGCGGCGCTGGGCGCAGCGGCCCACGGCCAGCCCGCACCACACGGCCAGCGCCGTGGCGCTGGTCGGCGGCGGCT
CGCCGCCGCGCCCGGGCGAGATCTCGCTGGCGCACCACGGGGTGCTGTTCCTCGATGAATTCCCCGAGTTCAGCCGCGCC
GCGCTGGAAGCCCTGCGCGAGCCGCTGGAGACCGGCCGCATCAGCATCGCGCGCGCCGCGCAGCGCGCCGAGTTTCCCGC
GCGCTTCCAGCTGGTGGCGGCGATGAACCCCTGCCCCTGCGGCTTCTGGGGCTCGGCGCTGCGGCGCTGCCGCTGCACGC
CCGACCAGGTGGCGCGCTACCAGGGCAAGCTCAGCGGCCCGCTGCTCGACCGCATCGACCTGCATGTCGAAGTGCCGGCG
CTGCCCGCGGCGCAGCTGCTGGCGGCGGCGCCCGCCGAAACCACGGCGCAGATCCGCGCGCGCGTGGCAAAGGCCCATGC
CGCGGCGCTGCGGCGCCAGGGCGCGCCCAACCAGCAGCTGCAGGGCCGCGCCATCGACCAGCACCTGCGGCTGGCATCCG
CGGCCAGCGATTTCGTGCAGGCCGCCGCCGCGCGCCTGGGCTGGTCGGGGCGCAGCCTGCACCGCGTGCTCAAGGTGGCG
CGCACGATTGCCGATCTGGCGGACAGCGCCGGCATCGAGACGCCGCATGTGGCGGAGGCGGTGCAGTACCGGCGGGCGCT
GCTGCAGGCGCAGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-136)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-405)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(413-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.581

99.022

0.511
  comM Glaesserella parasuis strain SC1401

50.69

99.217

0.503
  comM Vibrio campbellii strain DS40M4

49.802

99.022

0.493
  comM Haemophilus influenzae Rd KW20

48.833

100

0.491
  comM Legionella pneumophila str. Paris

48.047

100

0.481
  comM Legionella pneumophila strain ERS1305867

48.047

100

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.3

100

0.425