Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | DO80_RS06825 | Genome accession | NZ_AP019730 |
| Coordinates | 1369069..1370205 (-) | Length | 378 a.a. |
| NCBI ID | WP_108303701.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain TN2wt | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1364069..1375205
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DO80_RS06805 (DO80_13200) | hypE | 1364228..1365226 (+) | 999 | WP_108303704.1 | hydrogenase expression/formation protein HypE | - |
| DO80_RS06810 (DO80_13210) | - | 1365504..1366436 (-) | 933 | WP_108303703.1 | GDP-L-fucose synthase family protein | - |
| DO80_RS06815 (DO80_13220) | gmd | 1366429..1367574 (-) | 1146 | WP_108303726.1 | GDP-mannose 4,6-dehydratase | - |
| DO80_RS06820 (DO80_13230) | - | 1367588..1369000 (-) | 1413 | WP_108303702.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| DO80_RS06825 (DO80_13240) | comB10 | 1369069..1370205 (-) | 1137 | WP_108303701.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| DO80_RS06830 (DO80_13250) | comB9 | 1370198..1371166 (-) | 969 | WP_108303700.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| DO80_RS06835 (DO80_13260) | comB8 | 1371166..1371909 (-) | 744 | WP_000660533.1 | type IV secretion system protein | Machinery gene |
| DO80_RS06840 | comB7 | 1371906..1372031 (-) | 126 | WP_001217874.1 | hypothetical protein | Machinery gene |
| DO80_RS06845 (DO80_13270) | comB6 | 1372047..1373102 (-) | 1056 | WP_108303699.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| DO80_RS06850 (DO80_13280) | - | 1373110..1374105 (-) | 996 | WP_108303698.1 | PDZ domain-containing protein | - |
| DO80_RS06855 (DO80_13290) | - | 1374105..1374398 (-) | 294 | WP_000347923.1 | YbaB/EbfC family nucleoid-associated protein | - |
| DO80_RS06860 (DO80_13300) | panD | 1374409..1374759 (-) | 351 | WP_000142272.1 | aspartate 1-decarboxylase | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42150.70 Da Isoelectric Point: 9.8461
>NTDB_id=73635 DO80_RS06825 WP_108303701.1 1369069..1370205(-) (comB10) [Helicobacter pylori strain TN2wt]
MNKWLKGALVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTNSPIEPKTNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK
MNKWLKGALVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTNSPIEPKTNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=73635 DO80_RS06825 WP_108303701.1 1369069..1370205(-) (comB10) [Helicobacter pylori strain TN2wt]
ATGAATAAGTGGCTTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCCTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGATGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAGGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAACTCTCCTATAGAACCAAAAAC
AAACACAACCCCTCCTAAAAAAGATTTTTCTCTAAAGCAATTAGATTTACTGGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCGAGCATGGGCAAGGCCGTCTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCCTTAAACAACAGGGGCAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGTGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGCTTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCCTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGATGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAGGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAACTCTCCTATAGAACCAAAAAC
AAACACAACCCCTCCTAAAAAAGATTTTTCTCTAAAGCAATTAGATTTACTGGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCGAGCATGGGCAAGGCCGTCTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCCTTAAACAACAGGGGCAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGTGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
94.709 |
100 |
0.947 |