Detailed information NTG0073636

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: DO80_RS06830
• Genome accession: NZ_AP019730
• Coordinates: 1370198..1371166 (-)
• Length: 322 a.a.
• NCBI ID: WP_108303700.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain TN2wt
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1365198..1376166

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DO80_RS06810 (DO80_13210)	-	1365504..1366436 (-)	933	WP_108303703.1	GDP-L-fucose synthase family protein	-
DO80_RS06815 (DO80_13220)	gmd	1366429..1367574 (-)	1146	WP_108303726.1	GDP-mannose 4,6-dehydratase	-
DO80_RS06820 (DO80_13230)	-	1367588..1369000 (-)	1413	WP_108303702.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
DO80_RS06825 (DO80_13240)	comB10	1369069..1370205 (-)	1137	WP_108303701.1	DNA type IV secretion system protein ComB10	Machinery gene
DO80_RS06830 (DO80_13250)	comB9	1370198..1371166 (-)	969	WP_108303700.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
DO80_RS06835 (DO80_13260)	comB8	1371166..1371909 (-)	744	WP_000660533.1	type IV secretion system protein	Machinery gene
DO80_RS06840	comB7	1371906..1372031 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
DO80_RS06845 (DO80_13270)	comB6	1372047..1373102 (-)	1056	WP_108303699.1	P-type conjugative transfer protein TrbL	Machinery gene
DO80_RS06850 (DO80_13280)	-	1373110..1374105 (-)	996	WP_108303698.1	PDZ domain-containing protein	-
DO80_RS06855 (DO80_13290)	-	1374105..1374398 (-)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
DO80_RS06860 (DO80_13300)	panD	1374409..1374759 (-)	351	WP_000142272.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 322 a.a.
• Molecular weight: 36924.54 Da
• Isoelectric Point: 9.2414

>NTDB_id=73636 DO80_RS06830 WP_108303700.1 1370198..1371166(-) (comB9) [Helicobacter pylori strain TN2wt]
MRKVLCALVGFLLVSSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQIQENTLEKAPTNNKPLKEEKEETKEKEEETITIGDSTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKK
SKLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGK
DE

Nucleotide

• Length: 969 bp

>NTDB_id=73636 DO80_RS06830 WP_108303700.1 1370198..1371166(-) (comB9) [Helicobacter pylori strain TN2wt]
ATGCGTAAGGTTTTATGCGCTCTTGTGGGCTTTTTGTTGGTTTCTAGTGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTACTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTTATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCACAAATTCAAGAAAATACCCTTGAAAAGGCTCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAAACTATAACGATTGGCGATAGCACGAATGCAATGAAAATCGTTA
AAAAAGACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAA
TCCAAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCT
CTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCAGTAAATACTAGGATTGTGGGCGATTATATTA
TCGCTGAAGATGTCTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGTAAA
GATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-313)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	93.252	100	0.944