Detailed information NTG0073639

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: DO80_RS06845
• Genome accession: NZ_AP019730
• Coordinates: 1372047..1373102 (-)
• Length: 351 a.a.
• NCBI ID: WP_108303699.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain TN2wt
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1367047..1378102

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DO80_RS06820 (DO80_13230)	-	1367588..1369000 (-)	1413	WP_108303702.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
DO80_RS06825 (DO80_13240)	comB10	1369069..1370205 (-)	1137	WP_108303701.1	DNA type IV secretion system protein ComB10	Machinery gene
DO80_RS06830 (DO80_13250)	comB9	1370198..1371166 (-)	969	WP_108303700.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
DO80_RS06835 (DO80_13260)	comB8	1371166..1371909 (-)	744	WP_000660533.1	type IV secretion system protein	Machinery gene
DO80_RS06840	comB7	1371906..1372031 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
DO80_RS06845 (DO80_13270)	comB6	1372047..1373102 (-)	1056	WP_108303699.1	P-type conjugative transfer protein TrbL	Machinery gene
DO80_RS06850 (DO80_13280)	-	1373110..1374105 (-)	996	WP_108303698.1	PDZ domain-containing protein	-
DO80_RS06855 (DO80_13290)	-	1374105..1374398 (-)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
DO80_RS06860 (DO80_13300)	panD	1374409..1374759 (-)	351	WP_000142272.1	aspartate 1-decarboxylase	-
DO80_RS06865 (DO80_13310)	-	1374749..1376971 (-)	2223	WP_108303697.1	AAA family ATPase	-
DO80_RS06870 (DO80_13320)	-	1376971..1377243 (-)	273	WP_108303696.1	ATP-dependent Clp protease adaptor ClpS	-
DO80_RS06875 (DO80_13330)	-	1377263..1377676 (-)	414	WP_001022995.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39741.69 Da
• Isoelectric Point: 8.8165

>NTDB_id=73639 DO80_RS06845 WP_108303699.1 1372047..1373102(-) (comB6) [Helicobacter pylori strain TN2wt]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPLHFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKEAYKLATNLSANLSQNALNSLQYITTPPASSPISASTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=73639 DO80_RS06845 WP_108303699.1 1372047..1373102(-) (comB6) [Helicobacter pylori strain TN2wt]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCAATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCACTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCTTTGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAGCTTACAAACTCGCCACCAATTTGAGCGCCAACCTTAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTGCTTCTACAAGAGAAAGTGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.581	100	0.966