Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OE105_RS12070 Genome accession   NZ_CP106877
Coordinates   2579738..2580223 (-) Length   161 a.a.
NCBI ID   WP_275420422.1    Uniprot ID   A0A9E8LYT1
Organism   Fervidibacillus halotolerans strain MEBiC13594     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2574738..2585223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OE105_RS12050 (OE105_12055) rplI 2575596..2576045 (-) 450 WP_275420419.1 50S ribosomal protein L9 -
  OE105_RS12055 (OE105_12060) - 2576046..2578013 (-) 1968 WP_420842536.1 DHH family phosphoesterase -
  OE105_RS12060 (OE105_12065) - 2578097..2579035 (-) 939 WP_275420420.1 YybS family protein -
  OE105_RS12065 (OE105_12070) rpsR 2579368..2579610 (-) 243 WP_275420421.1 30S ribosomal protein S18 -
  OE105_RS12070 (OE105_12075) ssbA 2579738..2580223 (-) 486 WP_275420422.1 single-stranded DNA-binding protein Machinery gene
  OE105_RS12075 (OE105_12080) rpsF 2580263..2580550 (-) 288 WP_275420423.1 30S ribosomal protein S6 -
  OE105_RS12080 (OE105_12085) ychF 2580690..2581790 (-) 1101 WP_275420424.1 redox-regulated ATPase YchF -
  OE105_RS12085 (OE105_12090) - 2581826..2582050 (-) 225 WP_275420425.1 DUF951 domain-containing protein -
  OE105_RS12090 (OE105_12095) yyaC 2582225..2582857 (+) 633 WP_420842537.1 spore protease YyaC -
  OE105_RS12095 (OE105_12100) - 2582842..2583546 (-) 705 WP_275420426.1 DUF554 domain-containing protein -
  OE105_RS12100 (OE105_12105) - 2583609..2584463 (-) 855 WP_275420427.1 ParB/RepB/Spo0J family partition protein -
  OE105_RS12105 (OE105_12110) - 2584456..2585217 (-) 762 WP_275420428.1 ParA family protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 18208.04 Da        Isoelectric Point: 4.5716

>NTDB_id=736344 OE105_RS12070 WP_275420422.1 2579738..2580223(-) (ssbA) [Fervidibacillus halotolerans strain MEBiC13594]
MLNRVVLVGRLTKDPDLRYTPNGVPVATFTLAVNRTFTNQMGEREADFINCVVWRRQAENVANYLKKGSLAGVDGRLQTR
SYEAQDGRRVYVTEVVADSVQFLEPKSASSRDASSSAYGNQPTPFENDRQNQQRNPNIERETDPFFDDGQQIDISDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=736344 OE105_RS12070 WP_275420422.1 2579738..2580223(-) (ssbA) [Fervidibacillus halotolerans strain MEBiC13594]
TTGTTAAATCGAGTAGTATTAGTTGGCCGTCTAACAAAGGATCCGGATTTACGGTACACTCCAAATGGTGTTCCCGTTGC
TACCTTTACTTTAGCTGTAAATCGTACGTTTACGAATCAAATGGGTGAACGGGAAGCGGATTTTATTAATTGTGTAGTTT
GGAGAAGGCAAGCGGAAAACGTTGCAAATTATTTAAAAAAGGGAAGTTTGGCTGGTGTAGATGGTCGACTACAAACGAGA
AGTTATGAAGCACAGGACGGAAGACGAGTATACGTGACAGAAGTCGTTGCGGATTCTGTTCAATTTTTAGAACCGAAAAG
TGCATCTAGCCGAGATGCTTCTTCGTCGGCCTATGGAAATCAACCGACTCCCTTTGAAAACGACCGTCAGAATCAACAAA
GAAACCCCAACATCGAAAGAGAGACGGATCCATTTTTTGATGACGGCCAACAAATTGACATTTCTGATGACGACCTACCG
TTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

67.442

100

0.72
  ssb Latilactobacillus sakei subsp. sakei 23K

56.471

100

0.596
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

65.839

0.429
  ssbA Streptococcus mutans UA159

42.069

90.062

0.379
  ssb Glaesserella parasuis strain SC1401

33.898

100

0.373