Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NBH81_RS21010 Genome accession   NZ_CP106828
Coordinates   4497171..4498685 (+) Length   504 a.a.
NCBI ID   WP_263084985.1    Uniprot ID   -
Organism   Aeromonas veronii strain jsyz553301     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4492171..4503685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBH81_RS20995 (NBH81_20995) - 4493908..4494852 (-) 945 WP_257696751.1 branched-chain amino acid transaminase -
  NBH81_RS21000 (NBH81_21000) ilvM 4494865..4495143 (-) 279 WP_005342011.1 acetolactate synthase 2 small subunit -
  NBH81_RS21005 (NBH81_21005) ilvG 4495140..4496786 (-) 1647 WP_257696750.1 acetolactate synthase 2 catalytic subunit -
  NBH81_RS21010 (NBH81_21010) comM 4497171..4498685 (+) 1515 WP_263084985.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NBH81_RS21015 (NBH81_21015) - 4498812..4499711 (+) 900 WP_005339610.1 acyltransferase -
  NBH81_RS21020 (NBH81_21020) - 4499718..4500683 (+) 966 WP_263084986.1 acyltransferase -
  NBH81_RS21025 (NBH81_21025) - 4500608..4501114 (-) 507 WP_263084987.1 DUF523 domain-containing protein -
  NBH81_RS21030 (NBH81_21030) - 4501111..4501761 (-) 651 WP_005339607.1 NrtR DNA-binding winged helix domain-containing protein -
  NBH81_RS21035 (NBH81_21035) - 4501836..4502471 (+) 636 WP_216949835.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54632.53 Da        Isoelectric Point: 7.6716

>NTDB_id=735963 NBH81_RS21010 WP_263084985.1 4497171..4498685(+) (comM) [Aeromonas veronii strain jsyz553301]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLFDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQSAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGRWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=735963 NBH81_RS21010 WP_263084985.1 4497171..4498685(+) (comM) [Aeromonas veronii strain jsyz553301]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAGGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCTGTGAAGGAGTCGCGGGATCGGGTGCGCAGTGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACCGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGAGGTCGT
TTCGATCTGGCCATCGCCATCGGCATTCTCGCTGCTTCCAAGCAGATACCGGCAAAATACCTGTTCGATCATGAATTTTT
GGGGGAGTTGGCCCTGACCGGCGAAATTCGCCCCGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGGGATGCGGGGC
GCACTCTGCTGGTACCGCGGGAGAACGGCCCCGAAGCGTCCCTCATTCAGGATGCCGAAGTGCGCACCGCCCACCAGTTG
CTGGCCGTCACCGCCTGGCTGGCAGGCCAGTATGAACTGCCGCTGCCGGACCCCCAAAGCGCGGAGAGCCTGCCCGATGT
GCCGGACCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCGAGCCGATTGCCCGGCATCTTGCCGCCGCTCAGCGAGCAG
GAAGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACTCCGCGCGCCGGTCGCTGGCACCACAGACCCTATCG
CACGCCCCACCACAGTGCCTCCGCAGTGGCGCTGGTGGGTGGTGGCAGCCACCCGCGGCCCGGCGAAATTTCGCTGGCCC
ACAACGGGGTGCTGTTTCTCGACGAGCTGCCCGAATTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG
GGCCACATCACCATCAGTCGGGCCGCCCGTCAGGTGGATTTTCCCGCTCGCTTCCAGCTGGTCGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGTGACGGCCAGACCCGCTCCAGCCCGGATCAGATCTTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTGACAGTTGAGGTGCCGCTGCTGCCCAAGGGGAGCCTTACCGGCAAGGCAGAGCGGGGG
GAGTCTAGCCAGCAGATCCGCGATCGAGTGCTGGCAGCGCGAGAGCGGATGCTGAGCCGCAATGGCAAGCTCAACAACCT
GCTGGATAGCCGTGAGATAGAGGATATTTGCCGCTTATCACCGCAAGATGCCGAATTTTTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATCCTGCGGGTGTCACGCACCATCGCCGATCTGGCCGGGCAACCCGCCATC
GGCAAGGAGCATCTTATCGAGGCACTCGGTTATCGCGCCATGGACAGGCTGCTGTCGCGACTCCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.347

99.603

0.631
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Glaesserella parasuis strain SC1401

60.947

100

0.613
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464