Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   OCL39_RS09410 Genome accession   NZ_CP106805
Coordinates   1793726..1794220 (+) Length   164 a.a.
NCBI ID   WP_263055831.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10743     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1788726..1799220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCL39_RS09375 (OCL39_09375) - 1789164..1789289 (-) 126 Protein_1810 IS110 family transposase -
  OCL39_RS09380 (OCL39_09380) - 1789855..1790238 (+) 384 Protein_1811 pilin -
  OCL39_RS12135 (OCL39_09385) - 1790220..1790564 (+) 345 Protein_1812 pilin -
  OCL39_RS09390 (OCL39_09390) - 1790604..1790978 (+) 375 Protein_1813 pilin -
  OCL39_RS09395 (OCL39_09395) lpxC 1791472..1792395 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  OCL39_RS09400 (OCL39_09400) - 1792523..1792915 (+) 393 Protein_1815 pilin -
  OCL39_RS09405 (OCL39_09405) - 1793033..1793107 (+) 75 Protein_1816 pilin -
  OCL39_RS09410 (OCL39_09410) pilE 1793726..1794220 (+) 495 WP_263055831.1 pilin Machinery gene
  OCL39_RS09415 (OCL39_09415) - 1794751..1794879 (+) 129 WP_263055832.1 hypothetical protein -
  OCL39_RS09420 (OCL39_09420) - 1794864..1795549 (+) 686 Protein_1819 opacity family porin -
  OCL39_RS09430 (OCL39_09430) pilA 1795878..1797131 (-) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  OCL39_RS09435 (OCL39_09435) msrAB 1797277..1798845 (+) 1569 WP_003696503.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17707.22 Da        Isoelectric Point: 9.3372

>NTDB_id=735444 OCL39_RS09410 WP_263055831.1 1793726..1794220(+) (pilE) [Neisseria gonorrhoeae strain 10743]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGIWPENNASAGVASSSTIK
GKYVKEVKVENGVVTAQMASSNVNKEIKDKRLSLWAKRQDGSVKWFCGQPVKRAAGNAGAADGKDKEIDTKHLPSTCRDK
HSDT

Nucleotide


Download         Length: 495 bp        

>NTDB_id=735444 OCL39_RS09410 WP_263055831.1 1793726..1794220(+) (pilE) [Neisseria gonorrhoeae strain 10743]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCCGCCTACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TCACCGAGTATTACCTGAATCACGGCATATGGCCGGAAAACAACGCTTCTGCCGGCGTGGCATCTTCTTCAACAATCAAA
GGCAAATATGTTAAGGAAGTTAAAGTCGAAAACGGCGTCGTTACCGCCCAAATGGCTTCAAGCAACGTAAACAAAGAAAT
CAAAGACAAAAGACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCG
CCGCCGGCAACGCCGGCGCCGCCGACGGCAAAGACAAAGAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAA
CACTCTGACACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-158)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

83.636

100

0.841
  pilE Neisseria gonorrhoeae strain FA1090

81.707

100

0.817
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

34.555

100

0.402
  pilA/pilA1 Eikenella corrodens VA1

38.554

100

0.39
  comP Acinetobacter baylyi ADP1

37.037

98.78

0.366