Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   OCL40_RS09425 Genome accession   NZ_CP106803
Coordinates   1796051..1796548 (+) Length   165 a.a.
NCBI ID   WP_263057282.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10819     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1791051..1801548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCL40_RS09385 (OCL40_09385) - 1791457..1791840 (+) 384 Protein_1812 pilin -
  OCL40_RS09390 (OCL40_09390) - 1791822..1792166 (+) 345 Protein_1813 pilin -
  OCL40_RS09395 (OCL40_09395) - 1792206..1792574 (+) 369 Protein_1814 pilin -
  OCL40_RS09400 (OCL40_09400) - 1792614..1792979 (+) 366 Protein_1815 pilin -
  OCL40_RS09405 (OCL40_09405) - 1792961..1793299 (+) 339 Protein_1816 pilin -
  OCL40_RS09410 (OCL40_09410) lpxC 1793793..1794716 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  OCL40_RS09415 (OCL40_09415) - 1794844..1795236 (+) 393 Protein_1818 pilin -
  OCL40_RS09420 (OCL40_09420) - 1795354..1795428 (+) 75 Protein_1819 pilin -
  OCL40_RS09425 (OCL40_09425) pilE 1796051..1796548 (+) 498 WP_263057282.1 pilin Machinery gene
  OCL40_RS09430 (OCL40_09430) - 1797088..1797222 (+) 135 WP_256344619.1 hypothetical protein -
  OCL40_RS09435 (OCL40_09435) - 1797207..1797902 (+) 696 WP_263057283.1 opacity family porin -
  OCL40_RS12125 (OCL40_09440) - 1798010..1798195 (+) 186 WP_407028549.1 hypothetical protein -
  OCL40_RS09445 (OCL40_09445) pilA 1798231..1799484 (-) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  OCL40_RS09450 (OCL40_09450) msrAB 1799630..1801198 (+) 1569 WP_003696503.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17809.31 Da        Isoelectric Point: 9.5871

>NTDB_id=735396 OCL40_RS09425 WP_263057282.1 1796051..1796548(+) (pilE) [Neisseria gonorrhoeae strain 10819]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGEWPKNNASAGVASSSTIK
GKYVKEVKVENGVVTAQMASSNVNKEIKDKRLSLWAKRQDGSVKWFCGQPVKRAAGNAGAADGKDTDKIDTKHLPSTCRD
KHSDT

Nucleotide


Download         Length: 498 bp        

>NTDB_id=735396 OCL40_RS09425 WP_263057282.1 1796051..1796548(+) (pilE) [Neisseria gonorrhoeae strain 10819]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCCGCCTACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TTACCGAGTATTACCTGAATCACGGCGAATGGCCGAAAAACAACGCTTCTGCCGGCGTGGCATCTTCTTCAACAATCAAA
GGCAAATATGTTAAGGAAGTTAAAGTCGAAAACGGCGTCGTCACCGCCCAAATGGCTTCAAGCAACGTAAACAAAGAAAT
CAAAGACAAAAGACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCG
CCGCCGGCAACGCCGGCGCCGCCGACGGCAAAGACACCGACAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGAT
AAACACTCTGACACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-159)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

81.928

100

0.824
  pilE Neisseria gonorrhoeae MS11

81.818

100

0.818
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

34.043

100

0.388
  pilA/pilA1 Eikenella corrodens VA1

38.323

100

0.388
  comP Acinetobacter baylyi ADP1

37.423

98.788

0.37