Detailed information NTG0735109

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: N9L84_RS05315
• Genome accession: NZ_CP106785
• Coordinates: 1118935..1119804 (-)
• Length: 289 a.a.
• NCBI ID: WP_173173305.1
• Uniprot ID: A0A6J4DZF5
• Organism: Pseudomonas tohonis strain G5.110
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1113935..1124804

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N9L84_RS05275 (N9L84_05275)	-	1115229..1115402 (-)	174	WP_173173318.1	DUF3094 domain-containing protein	-
N9L84_RS05280 (N9L84_05280)	-	1115489..1116115 (-)	627	WP_173173316.1	DUF1780 domain-containing protein	-
N9L84_RS05285 (N9L84_05285)	-	1116228..1116653 (+)	426	WP_263152770.1	GNAT family N-acetyltransferase	-
N9L84_RS05290 (N9L84_05290)	-	1116650..1117117 (+)	468	WP_111263619.1	FAD/FMN-containing dehydrogenase	-
N9L84_RS05295 (N9L84_05295)	-	1117114..1117800 (+)	687	WP_263152771.1	energy-coupling factor ABC transporter permease	-
N9L84_RS05300 (N9L84_05300)	-	1117908..1118123 (+)	216	WP_213628504.1	hypothetical protein	-
N9L84_RS05305 (N9L84_05305)	yacG	1118127..1118327 (-)	201	WP_111263622.1	DNA gyrase inhibitor YacG	-
N9L84_RS05310 (N9L84_05310)	coaE	1118324..1118935 (-)	612	WP_263152772.1	dephospho-CoA kinase	-
N9L84_RS05315 (N9L84_05315)	pilD	1118935..1119804 (-)	870	WP_173173305.1	A24 family peptidase	Machinery gene
N9L84_RS05320 (N9L84_05320)	pilC	1119805..1121025 (-)	1221	WP_263152773.1	type II secretion system F family protein	Machinery gene
N9L84_RS05325 (N9L84_05325)	pilB	1121029..1122732 (-)	1704	WP_263152774.1	type IV-A pilus assembly ATPase PilB	Machinery gene
N9L84_RS05330 (N9L84_05330)	pilA	1122837..1123262 (-)	426	WP_263152775.1	pilin	Machinery gene

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31817.72 Da
• Isoelectric Point: 6.3185

>NTDB_id=735109 N9L84_RS05315 WP_173173305.1 1118935..1119804(-) (pilD) [Pseudomonas tohonis strain G5.110]
MTVIDFLAGNLPAFVFCIFLLGLLVGSFLNVVIYRLPVMMFRDWKAQAREALELPAEPQGETFNLILPNSRCPHCQHEIQ
AWENIPVVSWLALGGKCSSCKAPIKKRYPLVELACGLLSAYVAWHFGFTWQAGAFLVLTWGLLAMSMIDVDHQLLPDSLV
LPLLWLGLILNNQGMFATPSDALWGAVGGYLSLWSVYWVFKLVTGKEGMGYGDFKLLAMIGAWGGWQVLPLTILLSSLVG
AILGIIILKLRDADSSTPIPFGPYLAIAGWIALLWGDQITGTYLHFAGF

Nucleotide

• Length: 870 bp

>NTDB_id=735109 N9L84_RS05315 WP_173173305.1 1118935..1119804(-) (pilD) [Pseudomonas tohonis strain G5.110]
GTGACCGTCATCGACTTCCTGGCCGGCAACTTGCCGGCCTTTGTTTTCTGCATCTTCCTTCTCGGCCTTCTCGTCGGCAG
TTTCCTCAACGTCGTCATCTACCGCCTGCCGGTGATGATGTTCCGCGACTGGAAGGCGCAGGCGCGGGAGGCGTTGGAGC
TTCCGGCGGAGCCCCAGGGCGAGACCTTCAACCTGATCCTGCCGAACTCGCGCTGCCCGCATTGCCAGCATGAGATCCAG
GCCTGGGAGAACATCCCGGTGGTCAGCTGGCTGGCCCTGGGTGGCAAGTGCTCCTCGTGCAAGGCGCCGATCAAGAAGCG
CTACCCGCTGGTGGAGCTGGCGTGCGGCCTGTTGTCGGCCTATGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCCGGGG
CTTTCCTGGTGCTGACCTGGGGCCTGCTGGCGATGAGCATGATCGACGTCGACCACCAGCTGCTGCCGGATTCCCTGGTG
CTGCCGCTGCTATGGCTCGGGCTGATCCTCAACAACCAGGGCATGTTCGCCACGCCCAGCGATGCGCTCTGGGGTGCGGT
GGGCGGCTATCTCAGCCTGTGGTCGGTGTACTGGGTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCGATGATCGGCGCCTGGGGTGGCTGGCAGGTGCTGCCGCTGACCATACTGCTGTCGTCCCTGGTGGGG
GCGATCCTGGGGATCATCATCCTCAAGCTGCGCGACGCGGACAGCAGCACGCCCATCCCCTTCGGCCCCTACCTGGCCAT
TGCCGGCTGGATTGCATTGCTCTGGGGTGATCAAATAACCGGGACCTATCTCCACTTCGCCGGTTTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

3D structure

• AlphaFold DB: A0A6J4DZF5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	52.465	98.27	0.516
pilD	Vibrio cholerae strain A1552	56.015	92.042	0.516
pilD	Acinetobacter nosocomialis M2	51.761	98.27	0.509
pilD	Vibrio campbellii strain DS40M4	52.747	94.464	0.498
pilD	Neisseria gonorrhoeae MS11	50.958	90.311	0.46