Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   N9L84_RS01010 Genome accession   NZ_CP106785
Coordinates   206073..207569 (-) Length   498 a.a.
NCBI ID   WP_263152001.1    Uniprot ID   -
Organism   Pseudomonas tohonis strain G5.110     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 201073..212569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N9L84_RS00985 (N9L84_00985) - 201601..202560 (+) 960 WP_263151994.1 cysteine synthase family protein -
  N9L84_RS00990 (N9L84_00990) - 202592..203161 (+) 570 WP_263151995.1 phosphoribosyltransferase family protein -
  N9L84_RS00995 (N9L84_00995) - 203154..203819 (+) 666 WP_263151998.1 YggS family pyridoxal phosphate-dependent enzyme -
  N9L84_RS01000 (N9L84_01000) - 203859..204797 (+) 939 WP_263151999.1 DMT family transporter -
  N9L84_RS01005 (N9L84_01005) - 205177..205983 (-) 807 WP_263152000.1 TlpA disulfide reductase family protein -
  N9L84_RS01010 (N9L84_01010) comM 206073..207569 (-) 1497 WP_263152001.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  N9L84_RS01015 (N9L84_01015) - 207604..207867 (-) 264 WP_111261184.1 accessory factor UbiK family protein -
  N9L84_RS01020 (N9L84_01020) glnK 208277..208615 (+) 339 WP_003457590.1 P-II family nitrogen regulator -
  N9L84_RS01025 (N9L84_01025) - 208650..209969 (+) 1320 WP_263152006.1 ammonium transporter -
  N9L84_RS01030 (N9L84_01030) - 210178..210603 (+) 426 WP_111261182.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  N9L84_RS01035 (N9L84_01035) sutA 210680..211003 (+) 324 WP_111261181.1 transcriptional regulator SutA -
  N9L84_RS01040 (N9L84_01040) - 211063..211767 (-) 705 WP_263152008.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 52812.56 Da        Isoelectric Point: 6.8932

>NTDB_id=735098 N9L84_RS01010 WP_263152001.1 206073..207569(-) (comM) [Pseudomonas tohonis strain G5.110]
MSLALVHSRAQVGVEAPAVTVEAHLTNGLPSLALVGLPETAVKESKDRVRSAILTSGFEFPLRRITLNLAPADLPKDGGR
FDLAVALGILAASGQVPASSLETLECLGELALSGAVRPVQGVLPAALAARTAGRTLVVPRENAEEASLASGLRVIAIGHL
LELAAHLNGQAPLEPFVSAGLPDQAASYPDLIEVQGQVAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLQE
QEALEVAAIHSVASHAPLDAWPLRPFRQPHHSASGPALVGGGSKPRPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GEIVIARANDRVRFPARFQLVAAMNPCPCGYLGDSANRCRCTPEQIQRYRAKLSGPLLDRIDLHLTVAREATSLDDPLPG
GQDSASAAAEVARARQRQLDRQGCANAFLDLQGLRRHCPLPEADRRWLEGACERLGLSLRAAHRIIKVARTLADLEDTEA
VARHHLAEALQYRPSSEP

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=735098 N9L84_RS01010 WP_263152001.1 206073..207569(-) (comM) [Pseudomonas tohonis strain G5.110]
ATGTCCCTGGCCCTCGTCCACAGCCGCGCCCAGGTGGGCGTGGAAGCGCCGGCCGTCACGGTCGAGGCGCACCTGACCAA
CGGCCTGCCCTCGCTGGCCCTGGTCGGCCTGCCTGAGACGGCGGTGAAGGAGAGCAAGGACCGCGTCCGCAGCGCCATCC
TCACCAGCGGCTTCGAATTCCCGCTGCGCCGCATCACCCTCAACCTCGCCCCCGCCGACCTGCCCAAGGACGGAGGCCGC
TTCGACCTCGCCGTCGCGCTCGGCATCCTCGCCGCCAGCGGCCAGGTGCCGGCCTCCAGCCTGGAAACGCTCGAGTGCCT
GGGCGAGCTGGCCCTCTCCGGCGCCGTGCGCCCGGTCCAGGGCGTGCTGCCGGCCGCGCTCGCCGCCCGCACCGCCGGAC
GCACCCTGGTGGTGCCACGGGAGAACGCCGAGGAAGCCAGCCTCGCCAGTGGCCTGCGGGTGATCGCCATCGGCCACCTG
CTGGAGCTGGCCGCGCACCTGAACGGGCAGGCGCCCCTCGAACCCTTCGTTTCCGCCGGCCTGCCCGACCAGGCGGCCTC
CTACCCCGACCTGATCGAGGTGCAAGGCCAGGTGGCGGCCAAGCGCGCCCTGCTGGTGGCGGCGGCGGGGGCTCACAACC
TCCTGCTCTCCGGGCCGCCGGGCACCGGCAAGACGCTGCTCGCCAGCCGCCTGCCGGGCCTGCTGCCCCCCTTGCAGGAG
CAGGAGGCGCTGGAAGTCGCCGCCATCCACTCGGTGGCCAGCCATGCCCCGCTGGATGCCTGGCCCCTGCGCCCGTTCCG
CCAACCGCACCACAGCGCCTCCGGCCCCGCCCTGGTGGGGGGAGGCAGCAAGCCAAGGCCCGGCGAGATCACCCTCGCGC
ATCAGGGCGTGCTGTTCCTCGACGAGTTGCCCGAGTTCGATCGCAAGGTGCTCGAAGTGCTCAGGGAGCCCCTGGAAAGC
GGCGAGATCGTCATCGCCCGCGCCAACGACCGCGTGCGCTTCCCCGCGCGCTTCCAGCTGGTCGCCGCGATGAACCCCTG
CCCCTGCGGCTACCTGGGCGACAGCGCCAACCGCTGCCGCTGTACGCCCGAGCAGATCCAGCGCTACCGCGCCAAGCTCT
CCGGCCCGCTGCTCGATCGGATCGACCTGCACCTGACCGTCGCCCGCGAGGCCACGTCGCTGGACGACCCGCTTCCCGGT
GGCCAGGACAGCGCCAGCGCCGCCGCCGAGGTGGCCCGCGCCCGCCAGCGCCAGCTCGATCGCCAGGGCTGCGCCAACGC
CTTCCTCGATCTCCAGGGCCTGCGTCGCCATTGCCCGCTGCCCGAGGCGGACCGCCGCTGGCTGGAGGGCGCCTGCGAGC
GCCTCGGCCTGTCGCTGCGGGCCGCACACCGCATCATCAAGGTCGCCCGTACGCTCGCCGACCTGGAAGACACCGAGGCC
GTCGCCCGCCACCACCTCGCCGAGGCACTGCAGTACCGTCCCTCCTCGGAGCCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.97

99.398

0.566
  comM Vibrio campbellii strain DS40M4

55.758

99.398

0.554
  comM Haemophilus influenzae Rd KW20

53.6

100

0.538
  comM Glaesserella parasuis strain SC1401

52.2

100

0.524
  comM Legionella pneumophila str. Paris

49.505

100

0.502
  comM Legionella pneumophila strain ERS1305867

49.505

100

0.502
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.123

100

0.466