Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N7922_RS22970 Genome accession   NZ_CP106754
Coordinates   4865475..4865999 (-) Length   174 a.a.
NCBI ID   WP_017459456.1    Uniprot ID   -
Organism   Kosakonia sp. ML.JS2a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4860475..4870999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7922_RS22950 (N7922_22950) - 4862017..4862781 (-) 765 WP_263098428.1 IclR family transcriptional regulator -
  N7922_RS22955 (N7922_22955) - 4863171..4863866 (+) 696 WP_263098429.1 amino acid ABC transporter permease -
  N7922_RS22960 (N7922_22960) - 4863844..4864614 (+) 771 WP_263098430.1 amino acid ABC transporter ATP-binding protein -
  N7922_RS22965 (N7922_22965) - 4864637..4865410 (+) 774 WP_263098431.1 amino acid ABC transporter substrate-binding protein -
  N7922_RS22970 (N7922_22970) ssb 4865475..4865999 (-) 525 WP_017459456.1 single-stranded DNA-binding protein SSB1 Machinery gene
  N7922_RS22975 (N7922_22975) uvrA 4866256..4869090 (+) 2835 WP_263098432.1 excinuclease ABC subunit UvrA -
  N7922_RS22980 (N7922_22980) - 4869082..4869435 (-) 354 WP_263098433.1 MmcQ/YjbR family DNA-binding protein -
  N7922_RS22985 (N7922_22985) - 4869572..4869988 (-) 417 WP_263098434.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  N7922_RS22990 (N7922_22990) aphA 4870058..4870768 (-) 711 WP_263098435.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18677.62 Da        Isoelectric Point: 5.2456

>NTDB_id=734504 N7922_RS22970 WP_017459456.1 4865475..4865999(-) (ssb) [Kosakonia sp. ML.JS2a]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKQTGETKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=734504 N7922_RS22970 WP_017459456.1 4865475..4865999(-) (ssb) [Kosakonia sp. ML.JS2a]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAGCAGACCGGTGAAACAAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCTGAAGTGGCTGGCGAATATCTGCGTAAAGGCTCACAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACTGAGGTGGTGGTCAACGTTGG
TGGCACCATGCAGATGCTGGGTGGACGCCAGGGCGGCGGCGCACCGGCAGGCGGTGGCCAGCAGCAGGGTGGTTGGGGCC
AGCCTCAGCAACCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAACAGCAGTCTGCTCCGGCACCG
TCTAACGAACCGCCGATGGACTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.787
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.667

100

0.379