Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   N7220_RS09015 Genome accession   NZ_CP106736
Coordinates   1967094..1967621 (+) Length   175 a.a.
NCBI ID   WP_283151119.1    Uniprot ID   -
Organism   Silvimonas soli strain 17-6     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1962094..1972621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7220_RS08990 - 1962231..1964225 (+) 1995 WP_283151116.1 ribonucleoside triphosphate reductase -
  N7220_RS08995 nrdD 1964354..1964542 (+) 189 WP_283151117.1 anaerobic ribonucleoside-triphosphate reductase -
  N7220_RS09000 - 1964565..1965293 (+) 729 WP_283151118.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  N7220_RS09005 - 1965438..1966607 (+) 1170 WP_283151421.1 nitronate monooxygenase family protein -
  N7220_RS09015 pilA 1967094..1967621 (+) 528 WP_283151119.1 pilin Machinery gene
  N7220_RS09020 - 1967649..1968368 (+) 720 WP_283151120.1 hypothetical protein -
  N7220_RS09025 - 1968717..1969253 (+) 537 WP_283151121.1 transposase -
  N7220_RS09030 cysN 1969400..1970839 (-) 1440 WP_283151122.1 sulfate adenylyltransferase subunit CysN -
  N7220_RS09035 - 1970940..1971233 (-) 294 WP_283151123.1 YciI family protein -
  N7220_RS09040 cysD 1971309..1972235 (-) 927 WP_283151124.1 sulfate adenylyltransferase subunit CysD -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 17389.99 Da        Isoelectric Point: 6.9420

>NTDB_id=734205 N7220_RS09015 WP_283151119.1 1967094..1967621(+) (pilA) [Silvimonas soli strain 17-6]
MQRMQKGFTLIELMIVVAIIGILAAVAIPAYQNYIIRAKVTEGLGLGDAAKTVVADNAANAAAQFDLGYQPVGATANVTS
VAIDGTGAGGITITYTPSAGGVPGKNTITLTPYFKAGGTSAAAGTVLTALSIANGAIVVPTDAIQWDCSAENHTAVAPGA
VAGTLPAKYAPAACR

Nucleotide


Download         Length: 528 bp        

>NTDB_id=734205 N7220_RS09015 WP_283151119.1 1967094..1967621(+) (pilA) [Silvimonas soli strain 17-6]
ATGCAACGTATGCAAAAGGGTTTTACCCTTATCGAACTGATGATCGTGGTTGCGATTATCGGTATCCTGGCTGCTGTGGC
GATTCCGGCTTACCAAAACTACATCATCCGCGCAAAAGTGACTGAAGGTCTGGGTCTGGGTGATGCAGCTAAGACTGTTG
TTGCTGATAATGCCGCTAACGCAGCTGCTCAGTTTGACCTCGGGTATCAACCAGTGGGTGCCACTGCAAACGTGACTTCT
GTTGCTATTGATGGTACTGGTGCTGGCGGAATCACCATTACCTATACCCCAAGCGCTGGTGGTGTACCTGGTAAGAATAC
AATTACCCTGACCCCATATTTCAAAGCTGGTGGCACCTCCGCTGCAGCTGGGACCGTATTGACAGCTCTGTCGATTGCAA
ACGGTGCGATTGTCGTTCCGACCGATGCTATCCAGTGGGATTGCTCCGCAGAGAATCACACAGCCGTAGCTCCAGGCGCA
GTTGCAGGTACTCTGCCAGCCAAGTACGCTCCTGCCGCTTGCCGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(37-175)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

48.889

100

0.503
  pilA2 Legionella pneumophila str. Paris

46.857

100

0.469
  pilA2 Legionella pneumophila strain ERS1305867

46.857

100

0.469
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

35.266

100

0.417
  comP Acinetobacter baylyi ADP1

35.87

100

0.377