Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N7977_RS17030 Genome accession   NZ_CP106660
Coordinates   3624153..3624695 (-) Length   180 a.a.
NCBI ID   WP_021507842.1    Uniprot ID   -
Organism   Pantoea dispersa strain ML.8a3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3619153..3629695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7977_RS17010 (N7977_17010) - 3620231..3620626 (+) 396 WP_031279757.1 transposase -
  N7977_RS17015 (N7977_17015) - 3621536..3622489 (-) 954 WP_262256531.1 DMT family transporter -
  N7977_RS17020 (N7977_17020) - 3622562..3623392 (-) 831 WP_058757554.1 AraC family transcriptional regulator -
  N7977_RS17025 (N7977_17025) - 3623519..3624046 (+) 528 WP_262256532.1 isochorismatase family protein -
  N7977_RS17030 (N7977_17030) ssb 3624153..3624695 (-) 543 WP_021507842.1 single-stranded DNA-binding protein SSB1 Machinery gene
  N7977_RS17035 (N7977_17035) uvrA 3624917..3627745 (+) 2829 WP_262256534.1 excinuclease ABC subunit UvrA -
  N7977_RS17040 (N7977_17040) - 3628021..3629085 (+) 1065 WP_262256536.1 NAD(P)-dependent alcohol dehydrogenase -
  N7977_RS17045 (N7977_17045) - 3629086..3629442 (-) 357 WP_021507845.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19303.24 Da        Isoelectric Point: 5.2358

>NTDB_id=733813 N7977_RS17030 WP_021507842.1 3624153..3624695(-) (ssb) [Pantoea dispersa strain ML.8a3]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQSGQDKYTTEVVVNVGGTMQMLGGRQQGGNGGGAPMGGQGGGNNNGWGQPQQPQGGGNQFSGGAQQRPQ
QQSAPANNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=733813 N7977_RS17030 WP_021507842.1 3624153..3624695(-) (ssb) [Pantoea dispersa strain ML.8a3]
ATGGCCAGTCGTGGCGTAAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTGCGCTACATGCCGAATGG
TGGCGCGGTAGCCAACATTACGCTGGCCACGTCAGAGAGCTGGCGCGACAAGCAAACCGGTGAAAACAAAGAGATCACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAGCTGGCTGAAGTCGCCGGCGAATATCTGCGTAAAGGTTCGCAGGTCTACATT
GAAGGCCAGCTGCGCACCCGTAAATGGCAGGACCAGAGCGGTCAGGACAAATACACCACCGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGCAGGGCGGCAATGGCGGTGGCGCACCCATGGGCGGCCAGGGCGGCGGCA
ACAATAACGGCTGGGGCCAGCCGCAGCAGCCGCAGGGTGGGGGCAACCAGTTCAGCGGCGGCGCGCAGCAGCGTCCACAG
CAGCAGAGCGCACCGGCGAACAACGAACCACCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.118

100

0.756
  ssb Glaesserella parasuis strain SC1401

58.378

100

0.6
  ssb Neisseria meningitidis MC58

45

100

0.45
  ssb Neisseria gonorrhoeae MS11

45

100

0.45
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.222

100

0.372