Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   N7977_RS00550 Genome accession   NZ_CP106660
Coordinates   118729..120249 (-) Length   506 a.a.
NCBI ID   WP_058775137.1    Uniprot ID   A0A246NHR6
Organism   Pantoea dispersa strain ML.8a3     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 113729..125249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7977_RS00540 (N7977_00540) hdfR 117419..118240 (-) 822 WP_031279770.1 HTH-type transcriptional regulator HdfR -
  N7977_RS00545 (N7977_00545) - 118362..118700 (+) 339 WP_021507919.1 DUF413 domain-containing protein -
  N7977_RS00550 (N7977_00550) comM 118729..120249 (-) 1521 WP_058775137.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  N7977_RS00555 (N7977_00555) ilvL 120578..120676 (+) 99 WP_071813600.1 ilv operon leader peptide -
  N7977_RS00560 (N7977_00560) ilvG 120826..122472 (+) 1647 WP_021507917.1 acetolactate synthase 2 catalytic subunit -
  N7977_RS00565 (N7977_00565) ilvM 122469..122726 (+) 258 WP_008106624.1 acetolactate synthase 2 small subunit -
  N7977_RS00570 (N7977_00570) - 122745..123674 (+) 930 WP_021507916.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54927.15 Da        Isoelectric Point: 7.8670

>NTDB_id=733797 N7977_RS00550 WP_058775137.1 118729..120249(-) (comM) [Pantoea dispersa strain ML.8a3]
MSLSKVLTRAALGVQAPLVTIEVHISNGLPALTLVGLPETTVKEARERVRSAIINSGFTFPAKRVTINLAPADLPKEGGR
YDLPIAIAILAASEQLPGDKLAHYEFLGELALNGALCGVQAAIPAAMAALQAGRQMVLAEQNQQDVGLIQQGETLVGKHL
VEICAFLHNQTALTVAHYQPETVPHEQQDLSDIIGQQQGRRALEITAAGGHNLLLLGPPGTGKTMLATRLPGIMPPLDDQ
EALECAAIASLVSSGTLHHQWRKRPFRAPHHSASLYALVGGGSLPRPGEISLAHNGVLFLDELPEFERKALDALREPIES
GEIAISRSRAKVTFPARFQLIGAMNPSPTGHYQGNHNRCTPQQVLRYLSRLSGPFLDRFDLSLEIPLLPGGSLSQKQQHS
ETSAQVRARVLAARAIQMARAGKVNAQLSNPEIARDCVLQQQDAEWLEEILNALGLSVRAWQRILKVARTIADLAGERQI
TRQHLQEAVGYRSIDRLLIYLHKSLE

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=733797 N7977_RS00550 WP_058775137.1 118729..120249(-) (comM) [Pantoea dispersa strain ML.8a3]
ATGTCTTTATCGAAAGTATTAACACGCGCGGCGCTCGGAGTGCAGGCTCCACTGGTGACGATTGAAGTGCATATCAGCAA
CGGTCTGCCAGCATTGACACTGGTTGGTCTGCCGGAAACCACCGTCAAAGAAGCCCGCGAACGCGTGCGCAGCGCCATTA
TCAATAGCGGTTTCACCTTTCCGGCGAAGCGCGTCACCATTAATCTCGCACCAGCTGATTTACCTAAAGAGGGTGGGCGC
TACGACCTGCCGATCGCTATCGCCATTCTCGCGGCCTCAGAGCAGCTGCCAGGCGATAAGCTGGCCCATTATGAGTTCCT
GGGTGAGCTGGCGCTAAACGGCGCGCTGTGTGGCGTTCAGGCCGCGATTCCTGCTGCCATGGCGGCGCTGCAGGCCGGAC
GTCAGATGGTCTTAGCGGAGCAGAATCAACAGGATGTCGGCCTGATACAACAGGGTGAAACGCTGGTGGGCAAGCATCTG
GTGGAGATCTGCGCTTTCCTGCATAACCAGACGGCGCTGACGGTCGCCCATTACCAGCCTGAAACGGTGCCACACGAGCA
GCAGGACCTGAGCGATATTATTGGCCAGCAGCAGGGACGGCGCGCGCTGGAAATTACCGCCGCCGGTGGCCATAACCTGT
TGCTGCTGGGCCCGCCCGGCACCGGTAAGACCATGCTGGCCACCCGATTGCCCGGCATTATGCCGCCGCTGGACGACCAG
GAAGCGCTGGAGTGCGCCGCAATTGCCAGCCTGGTCAGCAGCGGTACGCTACATCATCAGTGGCGTAAACGGCCGTTCAG
AGCGCCTCATCACAGCGCATCGTTGTATGCGCTGGTCGGCGGAGGATCACTACCGCGGCCGGGCGAAATTTCGCTGGCGC
ACAATGGGGTGCTGTTTCTTGATGAACTGCCCGAGTTTGAGCGCAAAGCGCTGGATGCGTTACGCGAACCGATTGAGTCC
GGTGAAATCGCCATTTCCCGTTCCCGTGCCAAAGTCACTTTCCCTGCGCGCTTTCAGCTGATTGGTGCAATGAATCCCAG
CCCGACGGGCCATTATCAGGGAAATCATAATCGCTGCACGCCGCAGCAGGTGCTGCGCTATCTCAGCCGGCTGTCTGGCC
CGTTTCTGGATCGCTTCGACCTGTCGCTGGAGATTCCGCTGCTACCGGGCGGCTCGCTTAGCCAGAAGCAGCAGCACAGC
GAAACCAGCGCGCAGGTGCGCGCCCGCGTACTGGCCGCCCGGGCGATACAGATGGCACGCGCGGGCAAAGTGAATGCGCA
GCTGTCGAATCCGGAGATCGCCCGTGATTGTGTGTTACAGCAGCAGGACGCGGAATGGCTGGAGGAGATCCTGAATGCAC
TGGGATTATCGGTGCGTGCATGGCAGCGCATCTTAAAGGTGGCGAGAACCATCGCAGATTTAGCGGGTGAACGGCAGATT
ACGCGTCAGCATCTGCAGGAGGCGGTGGGATATCGCAGTATCGATCGTTTACTGATTTACCTGCATAAAAGCCTGGAATG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-388)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A246NHR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

62.425

99.407

0.621
  comM Glaesserella parasuis strain SC1401

62.227

99.407

0.619
  comM Vibrio cholerae strain A1552

61.554

99.209

0.611
  comM Vibrio campbellii strain DS40M4

60.757

99.209

0.603
  comM Legionella pneumophila str. Paris

48.089

98.221

0.472
  comM Legionella pneumophila strain ERS1305867

48.089

98.221

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.281

100

0.433