Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   N5860_RS22900 Genome accession   NZ_CP104921
Coordinates   4818649..4820169 (+) Length   506 a.a.
NCBI ID   WP_149335732.1    Uniprot ID   -
Organism   Citrobacter portucalensis strain AHM21C2861I     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4813649..4825169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5860_RS22880 (N5860_22875) - 4815205..4816134 (-) 930 WP_149335733.1 branched-chain amino acid transaminase -
  N5860_RS22885 (N5860_22880) ilvM 4816152..4816415 (-) 264 WP_003018017.1 acetolactate synthase 2 small subunit -
  N5860_RS22890 (N5860_22885) ilvG 4816412..4818058 (-) 1647 WP_060683007.1 acetolactate synthase 2 catalytic subunit -
  N5860_RS22895 (N5860_22890) ilvL 4818198..4818296 (-) 99 WP_001311244.1 ilv operon leader peptide -
  N5860_RS22900 (N5860_22895) comM 4818649..4820169 (+) 1521 WP_149335732.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  N5860_RS22905 (N5860_22900) maoP 4820194..4820532 (-) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  N5860_RS22910 (N5860_22905) hdfR 4820639..4821484 (+) 846 WP_008787063.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55079.96 Da        Isoelectric Point: 7.1474

>NTDB_id=733554 N5860_RS22900 WP_149335732.1 4818649..4820169(+) (comM) [Citrobacter portucalensis strain AHM21C2861I]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTMVGLPETTVKESRDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTTHNLDTYELVGELALTGALRGVPGAISSATEAIRAGRRIIVAKENAAEVGLIHGEGCLIADHL
QAVCAFLEGKHDLDRPSSADFTPCALADDLSDVIGQEQGKRGLELTAAGGHNLLLIGPPGTGKTMLASRLRGLLPPLSND
EALESAAILSLVNSDTLQKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQSQVKG
EDSATVKQRVMAARERQYQRQNKLNAHLDSQDIHKYCPLRSDDAQWLEETLAHLGLSIRAWLRLIKVARTIADIEQSDHI
SRQHLQEAVGYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=733554 N5860_RS22900 WP_149335732.1 4818649..4820169(+) (comM) [Citrobacter portucalensis strain AHM21C2861I]
ATGTCACTATCGATTGTTCACACACGCGCTGCGCTGGGCGTGAATGCGCCAGCTATTACCATCGAGGTACATATCAGTAA
TGGTTTGCCTGGTTTAACCATGGTGGGATTACCCGAAACAACGGTAAAAGAATCCCGCGATCGGGTTCGCAGTGCGATTA
TTAATAGCGGTTATGAATTCCCGGCGAAGAAGATAACCATAAACCTCGCTCCGGCCGATCTCCCGAAAGAAGGGGGACGA
TATGATTTACCTATCGCAGTTGCGCTTCTGGCAGCGTCTGAGCAGCTTACAACCCATAACCTCGATACATATGAGCTGGT
AGGCGAATTAGCGCTTACAGGCGCGTTACGCGGCGTTCCCGGTGCGATATCAAGTGCAACTGAAGCTATTCGCGCAGGCA
GGAGAATTATTGTCGCAAAAGAGAATGCAGCTGAAGTGGGACTGATACACGGTGAAGGGTGCCTTATTGCCGATCATCTA
CAGGCTGTATGCGCATTTCTCGAAGGTAAGCATGATTTAGACAGACCATCATCGGCAGATTTTACCCCCTGCGCATTAGC
AGATGATCTGAGCGATGTTATCGGCCAGGAACAAGGTAAACGCGGACTGGAACTTACCGCAGCTGGCGGTCATAACCTCT
TACTCATCGGGCCGCCGGGAACGGGTAAGACCATGCTGGCCAGTCGCCTGAGAGGATTGCTTCCGCCACTGAGCAATGAT
GAGGCACTGGAAAGCGCCGCGATTCTAAGTCTGGTCAATTCCGACACGCTACAAAAACAGTGGAAACAACGCCCTTTTCG
TTCGCCGCATCACAGTGCTTCATTAACCGCCATGGTCGGTGGAGGCTCTATTCCTGCGCCAGGCGAGATATCTCTGGCGC
ATAACGGCATACTGTTTCTGGATGAACTTCCCGAGTTTGAGCGGCGCACGCTGGATGCACTGCGAGAGCCCATTGAGTCC
GGGCAGATTCATTTATCCCGCACTCGGGCAAAAATAACTTACCCCGCGCGTTTTCAGCTTATTGCTGCCATGAATCCCAG
CCCAACAGGACATTATCAGGGGAACCATAACCGCTGTACCCCAGAGCAGACACTACGCTACCTCAATCGATTATCAGGTC
CATTTCTTGACCGCTTCGATCTCTCCCTCGAAATCCCCTTACCGCCGCCCGGCATACTCAGCCAGAGCCAGGTAAAAGGG
GAAGATAGCGCAACAGTGAAGCAACGCGTTATGGCAGCACGAGAGCGTCAGTATCAGCGGCAGAATAAGTTAAATGCGCA
TCTGGACAGTCAGGATATCCATAAATACTGTCCATTGCGTAGCGACGATGCGCAGTGGCTTGAAGAAACGCTCGCGCATC
TCGGATTATCCATCCGCGCCTGGTTACGCCTGATAAAGGTCGCTCGAACGATCGCGGATATAGAACAATCTGACCATATA
TCTCGCCAGCACTTACAGGAGGCTGTTGGGTATCGGGCGATAGACAGATTACTCATTCATTTGCAGAAACTACTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.964

99.209

0.585
  comM Vibrio campbellii strain DS40M4

58.532

99.605

0.583
  comM Haemophilus influenzae Rd KW20

57.255

100

0.577
  comM Glaesserella parasuis strain SC1401

57.48

100

0.577
  comM Legionella pneumophila str. Paris

47.485

98.221

0.466
  comM Legionella pneumophila strain ERS1305867

47.485

98.221

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.857

99.605

0.427