Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RS71_RS07350 Genome accession   NZ_CP104920
Coordinates   1674553..1676079 (+) Length   508 a.a.
NCBI ID   WP_057085356.1    Uniprot ID   A0AAX4F1H0
Organism   Dickeya solani strain RNS 05.1.2A     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1669553..1681079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS71_RS07325 ilvE 1669744..1670670 (-) 927 WP_022635278.1 branched-chain-amino-acid transaminase -
  RS71_RS07330 ilvM 1670695..1670952 (-) 258 WP_038920524.1 acetolactate synthase 2 small subunit -
  RS71_RS07335 ilvG 1670970..1672616 (-) 1647 WP_057085358.1 acetolactate synthase 2 catalytic subunit -
  RS71_RS07340 ilvL 1672756..1672854 (-) 99 WP_071526243.1 ilv operon leader peptide -
  RS71_RS07345 - 1672994..1674208 (-) 1215 WP_022635281.1 MFS transporter -
  RS71_RS07350 comM 1674553..1676079 (+) 1527 WP_057085356.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RS71_RS07355 - 1676142..1676480 (-) 339 WP_022635283.1 DUF413 domain-containing protein -
  RS71_RS07360 hdfR 1676600..1677424 (+) 825 WP_022635284.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55421.03 Da        Isoelectric Point: 7.4033

>NTDB_id=733524 RS71_RS07350 WP_057085356.1 1674553..1676079(+) (comM) [Dickeya solani strain RNS 05.1.2A]
MTLAVTYTRATIGMQAPEVLIEVHISNGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIAGEKLAQYEFLGELGLSGSLRGVHGAIPAAMEAQKAGRGLILPEDNKMEITLVPHGDALLANHL
LQVCAFLQGETPLLRGNDITPETPAHTPIADLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLPGLLPPLD
DEEALESAAINSLIDIQPSLSQWRNRPFRSPHHTASITALVGGGGLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIVISRTRAKVCYPARFQLVAAMNPSPSGHYQGIHNRMPAQQILRYLNRLSGPFLDRFDLSIEVPLLPPGILRQQTR
IGEDSATVRERVFEARKRQLARIGRINAHMKSDDIACHCRLKSEDAAYLEEVMSKLGLSVRAWHRILKVSRTIADLGGED
QIHRTHLSEALSYRCMDRLLIQLHKSLA

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=733524 RS71_RS07350 WP_057085356.1 1674553..1676079(+) (comM) [Dickeya solani strain RNS 05.1.2A]
ATGACACTGGCTGTGACCTACACACGAGCCACCATCGGTATGCAGGCGCCCGAGGTTTTGATCGAAGTGCATATCAGTAA
TGGCTTGCCTGCACTGACACTGGTCGGTTTACCGGAAACCACGGTCAAAGAAGCGCGAGATCGGGTGCGCAGCGCCCTGA
TCAATTGTGGCTTCACCTTTCCCGCCAAGCGGATTACCGTCAACCTGGCGCCTGCGGACCTGCCGAAAGAAGGCGGACGA
TATGACCTCCCCATCGCCCTGGCCATTCTGGCAGCCTCAGAACAGATTGCCGGTGAGAAACTTGCACAGTATGAGTTCCT
CGGTGAACTCGGGCTGTCAGGCAGCCTGAGAGGCGTTCATGGCGCTATTCCGGCGGCGATGGAAGCGCAAAAAGCTGGCC
GGGGGTTGATTCTGCCGGAAGACAACAAAATGGAAATCACGCTGGTTCCGCATGGCGATGCGCTACTGGCTAATCACCTG
CTGCAGGTCTGTGCCTTTTTGCAAGGCGAAACGCCGTTGCTGCGCGGCAACGATATTACGCCTGAAACACCAGCCCATAC
GCCGATAGCGGACCTGAAGGACATCATCGGTCAGGAACAAGCCAAACGCGCACTGGAAATTGCGGCAGCAGGCGGACATA
ACCTGCTATTACTCGGTCCACCGGGCACCGGCAAAACCATGCTGGCCAGTCGTCTGCCCGGTTTGTTGCCGCCGCTTGAT
GACGAGGAAGCGCTGGAAAGCGCCGCCATCAACAGCCTGATTGATATTCAGCCCAGCCTGTCGCAATGGCGTAACCGGCC
ATTTCGTTCGCCTCACCACACCGCATCCATTACTGCGCTGGTCGGCGGCGGCGGATTGCCCAAACCTGGCGAGATCTCGC
TGGCGCATAATGGTGTGCTGTTTCTGGATGAATTGCCGGAATTTGAACGACGGGTACTGGACTCGCTGCGGGAACCGCTG
GAATCAGGTGAAATTGTGATTTCTCGTACCCGCGCCAAGGTCTGTTATCCCGCCCGTTTTCAGTTAGTGGCCGCCATGAA
TCCCAGTCCATCAGGACACTATCAGGGTATCCATAACCGTATGCCGGCACAGCAAATCCTGCGCTACCTCAACCGGCTCT
CCGGTCCCTTTCTGGATCGTTTTGATTTATCCATTGAGGTGCCATTGCTGCCTCCCGGCATTCTTCGCCAGCAAACACGT
ATTGGCGAGGACAGCGCAACCGTACGGGAGCGGGTATTTGAAGCCAGAAAACGGCAGTTAGCCCGCATCGGCAGAATCAA
CGCGCACATGAAATCGGATGACATCGCCTGTCACTGTCGGTTGAAGAGCGAGGATGCAGCGTACCTGGAAGAGGTGATGA
GCAAATTAGGGCTGTCGGTCAGAGCCTGGCACCGGATACTGAAAGTCTCGCGCACGATTGCCGACCTGGGAGGAGAAGAT
CAGATTCATCGTACTCATTTGTCGGAAGCGCTCAGCTATCGTTGTATGGATCGCCTGCTAATTCAGCTACACAAGAGCCT
GGCATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

63.439

99.606

0.632
  comM Glaesserella parasuis strain SC1401

63.116

99.803

0.63
  comM Vibrio cholerae strain A1552

62.624

99.016

0.62
  comM Vibrio campbellii strain DS40M4

61.706

99.213

0.612
  comM Legionella pneumophila str. Paris

52.008

98.031

0.51
  comM Legionella pneumophila strain ERS1305867

52.008

98.031

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.351

99.803

0.463